G844859 (LOC106604021)


Basic Information

Item Value
gene id G844859
gene name LOC106604021
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 866424 ~ 869797 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU962126
AAAAAAGTAAAAACCCtaaaaacaatatatacataCCACATACTTGCATGAATGATTATTACAATACAAACATTCCCATATTGAACATTCTGTATTCTCTGAAACACACTTAGCTAATTCCTTTGATACAGTAGTATTATCAAATGGGCAGtggcctccattcgctatttgtGACATGTATTTTCTaccctgcccctgttcctgcccatttgatcATGTGCCAtactaaatcaaaactaattgaATATATTAGTAAAGATAATATTTatttgagaatagtctgatgggtgaaaatatgatcacttgatgagggaaaagctgtgcagcctgaggcatTTTGcataaccggctgacaaaatgtcatgactgccACAGCTTTAGTAGGAAGTTCCTATAGACCGCTGAGTTGTTTTCCTTCAGAGTCAGCGAACAGGTACAACAGGTACCAGGtcataacatctacagaaaagacaggaatgccaatggtggaggtgttggtgtttatattcagaaccacattcctgtcaAGATTATTCAGatccatcagatgtagtgatcataatataatatccatgtctaggaaaaccaaaTTTGCAAAGACAAAAATTGTGTCATGTGGTCATAAAATAGGTTTTGCAGTGTCGAATATGTGAACAATATTTGTTGATCTGACGTGTGTAATGAGTAAAAACCCTCATTGTTTTTTGCACAgcctgtacacacttcatcagtctctcattcacaatttgacaagcaaaCCATTTCCTGGCAGAATCCCCCGTGTGGCCGTAACGCCCCCTAAACAAATCCACGTCTTTTGTGGCCAGTGGCCGTTgcgcccttgggctgaatattaTAATCCCCTTCTTCCGGCTGCCAATCACTGTGCtccaaagcacctctcactcacatggctctctcagatggCTCTCTCATAAAAATCTACATTTTTATTAGCCAATGCCTGTCACACGATTGTGTCCTTCTCACAGGCATCTCACCTAAGAAGTaagctacaagtgaagacagacacatcggggacacaACTGCACACGTCCctcttatccaattccgaggcgcATATATTAGATGTTAAAAGAACTGtgcacatttacttttcgtcagccaacaaaaTGAGTAGGTCTAACGAACAGCAACAGCACTAGCCCatatcaatctactatccccaatAGTACAAAAGTCAACCTATTCCATTGGTCAACTTGTCTTTCTGTGCGAGAAgatgcaacagatcagaatgtttagcttaaaatgtgataacctattaggctatttcttcacattataagggAAGCAATGTGCACACCTCAGTAAGCATGAATGTCCCATTATCAGTAAACACTATTATCAAAACAGACCCTGCTTATGTAtgtagttaggctctacaccctgCTTATGTAtgtagttaggctctacaccctgCTTATGTAtgtagttagGCTTTATACCTGTTGaaaagcagattaatgtgctttgttttaagaagttatttggacacttagttgtgatacaaatctTATCAGAGCAAATAGGCCtgtgggctaggctacatgaggtgtgcaactATGATTTGAAGAAGAAAAAGGCATGCGCTGTTTCTTGCTGCACACAAGCTGGGTATCAAGTGATAATACACCATTCACATGTGATTgtctaatattgtcacccatcagactattcttgatttaatcttgtctttactaaaTGACATATgtgtgaaatgtattttgacttagaatggaccattatcaggcacctgtatcgaaacaggggGAATAAATATGTCATctctgcacttaaatagcgaatggaggacgctttttcctgtggttcattttTATGCTAGTCAGGTAatctatactcctgttgtaaagataagcaatgtgcttaatattaggaaatttgagaaataaatacagtaggcctactctATAGagagctgatgggatcctcctctttttaatagaggccatcactctgttttctcacgcaattgcatagcctatagaaatgttgagcaacatgagctctcatgaagtgtttgattagattttccattacatttgtattgatgtcagagagattagagagacaatagagtgctgagtaccaggtagTTAACAAGTTTGGTTGACTACTAACGActagcatcagagcttggagaacccgaattaccgtgactaaacggtcatgtggaatttgactgagGTCCATAACCTATGACTGCCTAGTCACCGTTACAGCCATAGTTATGTATATTATGTATTTCTGGCGGCGGCTAATTGGGGATAAAATACTCAAATCAATCAATCCATTCGTTTCCAGATTAGGCTATGCTATGCATATTGCTTAATGGAACCCTCTAAATTCTCAAAATCTGGGATCTGTTCAATAAGCTGTCGTGCATCTTTTTGTAAAGCAGAAAAGTAACGCTTTGTCTCTTTCAGGTCCCTGTCTCTATTGATCTCCAGCTGTCTGATTCTGTTTTCCTTCTCCAGGACCGTCTCCTCAAGAGTTAGATTTTCAATCAGCAGTGCTCTCAGAGCTTCCTCGTATCTAGCTAGTAATGATGCCTCCTTTTCCTGCATTTTCTTCTCAAAGATATCCCTGACCTTCCTTTCCCTATCAGCAAGCATTTCGTTTACTTGTTGATATGTGTAATTTGTGTAGTAGCTACCCTGATTTGCCTTAATCATTTCATCTATCTTGTCAAAGAGTTTCAGCACTTGGGTACGGTCACTTTTGTCCATATTGTTGAAGACATGGTATCTATTCCCTAACCTCTGCAGAATTTTTCTGAATTCCTCATTTGCCTCTTCCAACATTTTCTCAATCCCTCCTTCAGCACAGGTAAAAAGGATCATGGTGTGCTTCTCTGCATCTTTCCCAAATATTTCCTCAAGTTTCTGTACTGtgctcatctcctccctggtgATGGGACCTACTTTAATGACAACTATGATGGCATGGGGACCAGGTGCTGACATGTTGACACACTTAGctatctctctcttcactgtcAATTCAGGCAGATTTGTGTCTAATAGACCAGGTGTATCGACTACggtgacctgtctgtctcccacCTCCCCTGTCTCTTTAGAACACTCTTTGGTGACAGATGACATACGACCAGCTGATCTGAAGGCATCTCTCCCCAGGATGGTGTTGGCTGAAGAACTCTTCCCAGCACCAGTCTTCCCCACCAGCACTATTCTGGT

Function

NR:

description
GTPase IMAP family member 7-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU962126 True 3242 lncRNA 0.40 3 866424 869797

Neighbor

gene id symbol gene type direction distance location
LOC110534824 LOC106604036 coding downstream 42561 792950 ~ 823863 (-)
mis18a LOC106604044 coding downstream 140931 697530 ~ 725493 (-)
sodc sodc coding downstream 241510 617477 ~ 624914 (-)
LOC110533253 bach1 coding downstream 253393 606394 ~ 613031 (-)
LOC110533228 LOC106604062 coding downstream 655019 131144 ~ 211405 (-)
LOC118966676 NA coding upstream 9850 879647 ~ 885369 (-)
LOC118966677 NA coding upstream 16319 886116 ~ 891268 (-)
LOC118966679 LOC106594186 coding upstream 46491 916288 ~ 922345 (-)
LOC118966678 NA coding upstream 52558 922355 ~ 925356 (-)
LOC118936903 NA coding upstream 276063 1145860 ~ 1212061 (-)
G844823 NA non-coding downstream 43370 822763 ~ 823054 (-)
G844820 NA non-coding downstream 53819 812339 ~ 812605 (-)
G844816 NA non-coding downstream 74521 789810 ~ 791903 (-)
G844801 NA non-coding downstream 78538 787676 ~ 787886 (-)
G844865 NA non-coding upstream 10449 880246 ~ 894219 (-)
G844870 NA non-coding upstream 27156 896953 ~ 897162 (-)
G844937 NA non-coding upstream 83268 953065 ~ 954581 (-)
G844968 NA non-coding upstream 148975 1018772 ~ 1019917 (-)
G844976 NA non-coding upstream 158343 1028140 ~ 1029996 (-)
G844847 NA other downstream 19672 844673 ~ 846752 (-)
G844794 NA other downstream 83686 782024 ~ 782738 (-)
G844686 NA other downstream 292486 571525 ~ 573938 (-)
LOC110533226 LOC107554284 other downstream 768729 92131 ~ 97728 (-)
heatr6 heatr6 other downstream 801724 44407 ~ 91388 (-)
G844866 LOC106591684 other upstream 14363 884160 ~ 890758 (-)
G844975 NA other upstream 155857 1025654 ~ 1027442 (-)
G845133 NA other upstream 364750 1234547 ~ 1235708 (-)
LOC110533263 NA other upstream 718567 1586498 ~ 1590637 (-)

Expression


Co-expression Network