G845019


Basic Information

Item Value
gene id G845019
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 1049153 ~ 1080774 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU962359
TGTACCTGGAGGGATTTGGTCAAATGTAACTAAGTAAACAGtaagcattcaccctctgaatggcacacagacacaatccatgtctcaattgtctcaaggcttaaaacccCATCTTTAACAGAACGCTAGGCACAACATTGAGCACCTTCATGTTGACCCAGTGGCTTCCATCGACAGGAAAGACCAGGACTTTTCCTCCATGGCAGGACGGTgcaggaaggagaaggagaaatgacACCAGACTTAGAAACGAGAGGTCTCCCCAAGGAGAGCGGGAATACATTGTGTCTACACAGAGGAAAAAGAGGACAAAAGTCATTATGTTATATACTTGTGTCAATAAGTTAGTATTGTCTACACTATTACATAACAACAAACTACTTGAGTGTAGGTGAATAAGAATATGCAATAAGAGTTGGCTTACCGGTGCTATAGAGTCCATGCAGCACTAACAACGCTCTGCAGGGGACTGCAAACTGCAACATAAAGGCTGGCAATACTTTGAACGTTTCAGGGTTCAAAGTCCACCTGATAGTATAGACGTCCTGCTATAGCCCAGGTAGATGATTTACAAACAGATAGTGGTGCCTCCCAAATTGCACTAGTTTTGCCCAGGGTCCTCAGGGCTCTGGTCGACATAGTAGACTattgtagggaataggatgccatttgtgaTTCAACCACTACATGGGCAATAACACTAGTGAGTTCTGGTAAAACACACCTGTCACATAACTGACCTCTTACCCAATGTAAATGCCTACTTATCATTGATACAATCCATATGTGATTGTGTCCACCTCTAGTCTGACTCCAGGTTGTTGTCAGAATGTATTCACCTGAACCTTTAAaacgttttgttgtgttacagtctgaatttaacatggattaaat
>TU962358
TGTACCTGGAGGGATTTGGTCAAATGTAACTAAGTAAACAGtaagcattcaccctctgaatggcacacagacacaatccatgtctcaattgtctcaaggcttaaaacccCATCTTTAACAGAACGCTAGGCACAACATTGAGCACCTTCATGTTGACCCAGTGGCTTCCATCGACAGGAAAGACCAGGACTTTTCCTCCATGGCAGGACGGTgcaggaaggagaaggagaaatgacACCAGACTTAGAAACGAGAGGTCTCCCCAAGGAGAGCGGGAATACATTGTGTCTACACAGAGGAAAAAGAGGACAAAAGTCATTATGTTATATACTTGTGTCAATAAGTTAGTATTGTCTACACTATTACATAACAACAAACTACTTGAGTGTAGGTGAATAAGAATATGCAATAAGAGTTGGCTTACCGGTGCTATAGAGTCCATGCAGCACTAACAACGCTCTGCAGGGGACTGCAAACTGCAACATAAAGGCTGGCAATACTTTGAACGTTTCAGGGTTCAAAGTCCACCTGATAGTATAGACGTCCTGCTATAGCCCAGGTAGATGATTTACAAACAGATAGTGGTGCCTCCCAAATTGCACTAGTTTTGCCCAGGGTCCTCAGGGCTCTGGTCGACATAGTAGACTattgtagggaataggatgccatttgggattcaaccACTACATGGGCAATAACACTAGTGAGTTCTGGTAAAACACACCTGTCACATAACTGACCTCTCACCCAATGTAAATGCCTACTTATCATTGATACAATCCATATGTGATTGTGTCCACCTCTAGTCTGACTCCAGGTTGTAGTCAGAATGTATTCACCTGAACctttaaaatgttttgttgtgttacagtctgaatttaacatggattaaattgagatgtttgtGTCTCTGGTTTaatgccccataatgtcaaagtggaattctggtttttagattttttgttgttgttacaaattcatttaaaaaaaaatgaaaagctgagctTGAGgtcaaaaagtattcaacccctttgttatggcaagactaagtcaactaaacaagttcaggagtacaaatgtgttaaacaaatcacacTTTTTTTGTGTACAAAAATAATGGTTAACGTgaatttttaatgactacctcatctctgtacccaggggcgcaactttgggtTTAGAGGTAAGGGGGACATAATTATAATTTTGTCAAATTtgcttgtatttttttttatttgggtCGGAAAAACACTCCAAGCTGTCGACTCGACCGCTCGGAGGTGTCCgcgtggtcctaaagcacaccgtctCCTAGATTTGTAttacattccaatgataaaacatgagaaaacacatacaattatctgtaaggtcactcagtcgagcagtgaatttcaaacacagattcaaccacaaacaccagggagattttccaataaCTCGcagagaagggcacctattggtagatgagtgaaaatcaaaaagcagacattgaatatccctttgagcatggtgaagttattcattacaaattggatggtgtaccaatacacccagtcacgacaaagatacaagcgtccttcctaactcagttgccagagaggaaggaaatcaatcagggatttcaccatgaggccaatgatgactctaaaacagttgcagagtttaatggctgtgataggagaaaactgaggatggatcaacaacattatagttactacaattactaacctaaatgacagagtgagaagtgaaactgcaaaaaaatgtaacAAAAGAAATGAATataaagataaaaaaaatatatatatatatatatataaatataaatccaACACAAGCATGGTGATGCCTACATTATATTTTGCAGGCCTAGGACTAGGATAAAAAGGAAGGGATTCGGAGCTATGCACTTGCAAAATCTGAGAAaaaactggttcagtctgctttccaccagacactgagatgaatacaCCTTTCAGCTGgggtgacagggtagcctagtggttagagcgatggactagtaactggaagtttgcaagttcaaacccctgagctgacaaggtacaaatctgtcattctgcccctgaacaggcagttaacccactaggctgttattgaaaataagaatttgttcttaactgacttgcctagtcaaataaaaatAACCTTAAACGCAAGGCTAAATagacactggagttgcttaccaagacaacattgaatgttcctgagttgcctagttacagttcagacttaaatctgctttaaattctatggcaagacttgaacatacctgtctagcaatgatcaacaaccaatttgatagagcttgaaggattttaaaaataataatgtgcaaagctcttagagacatacTGAGAAAAAATAATCGCTGTGAGATGTGTTGAATACTTACTGTATCTAATCAAGTTATATTGGTGTTTTACTTTTCATTACTTTTTATtatacaaatgttagaatttttcttccactttgaaattACACAGCATTGTGtcgatcgttgacaaaaaatgacTAAACTAAACCCATTTTAATCCcaatttgtaacacaacaaaatgtggaaaaaataaaggcatttgaatactttctgaataacTTGTCTTCATAATGTGCCAACAGAAGCAGATGATAATaatcaacagcactgcaccccccacaacaactcgcccaagccttccccatttctccttctcccaaatctgctcaactgatgttctgaatgagctgcaaaatctggacccctacaaatctaTAGACCTATATGTATCCTAccatggctttcgaagaccttagaaaggcaagtttacaaacagattaccgaccatttcgaatctcaccgtaccttctctgctatgcaatctggtttcagagctggtcatgagtgcacct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU962359 False 894 lncRNA 0.43 3 1049153 1080774
TU962358 True 2911 lncRNA 0.39 3 1077754 1080774

Neighbor

gene id symbol gene type direction distance location
LOC118966678 NA coding downstream 123797 922355 ~ 925356 (-)
LOC118966679 LOC106594186 coding downstream 126808 916288 ~ 922345 (-)
LOC118966677 NA coding downstream 157885 886116 ~ 891268 (-)
LOC118966676 NA coding downstream 163784 879647 ~ 885369 (-)
LOC110534824 LOC106604036 coding downstream 225290 792950 ~ 823863 (-)
LOC118936903 NA coding upstream 65086 1145860 ~ 1212061 (-)
LOC110533260 LOC106604035 coding upstream 187856 1268630 ~ 1273544 (-)
LOC110518095 LOC106604029 coding upstream 196638 1277329 ~ 1347922 (-)
LOC110533263 NA coding upstream 505724 1586498 ~ 1590637 (-)
LOC110534825 nbea coding upstream 516575 1597349 ~ 1880906 (-)
G844976 NA non-coding downstream 19157 1028140 ~ 1029996 (-)
G844968 NA non-coding downstream 29236 1018772 ~ 1019917 (-)
G844937 NA non-coding downstream 94572 953065 ~ 954581 (-)
G844870 NA non-coding downstream 151991 896953 ~ 897162 (-)
G844865 NA non-coding downstream 154934 880246 ~ 894219 (-)
G845040 NA non-coding upstream 20364 1101138 ~ 1101431 (-)
G845047 NA non-coding upstream 28412 1109186 ~ 1109392 (-)
G845052 NA non-coding upstream 32315 1113089 ~ 1113315 (-)
G845053 NA non-coding upstream 32936 1113710 ~ 1113917 (-)
G845055 NA non-coding upstream 35153 1115927 ~ 1116164 (-)
G844975 NA other downstream 21711 1025654 ~ 1027442 (-)
G844866 LOC106591684 other downstream 158395 884160 ~ 890758 (-)
G844847 NA other downstream 202401 844673 ~ 846752 (-)
G844794 NA other downstream 266415 782024 ~ 782738 (-)
G845133 NA other upstream 153773 1234547 ~ 1235708 (-)
G845570 NA other upstream 569166 1649940 ~ 1651993 (-)
G845683 NA other upstream 885852 1966626 ~ 1967072 (-)
G845769 NA other upstream 1012461 2093235 ~ 2098359 (-)

Expression


Co-expression Network