XLOC_002766 (pitpnab)


Basic Information

Item Value
gene id XLOC_002766
gene name pitpnab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24323751 ~ 24371312 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005122
GGGAGACCGAGACACCGGGACTAACGCAGGACTCGACACACATTTAATTCATCCAGGTGCAAAAACCGACGTTGTCTTTGGGAGGCATAAAGCACCGGAGAAAATGCTCATTAAAGAATTTCGAGTGATCCTACCGATTTCTGTGGAGGAGTATCAAGTCGGGCAGCTATATTCAGTAGCGGAGGCCAGTAAGAACGAGACGGGTGGAGGAGAAGGTGTGGAAGTGCTAAAGAACGAACCCTATGAGAAGGATGGAGAGAAGGGCCAGTACACACACAAAATCTACCACCTGCAGAGTAAAGTCCCATCTTTTGTACGAATGCTTGCACCAGCGTCAGCACTGAACATTCATGAGAAAGCTTGGAACGCCTACCCATACTGCCGcacagTAATAACTAATGAGTACATGAAAGAAAACTTCCTCATCAAGATCGAGACATGGCACAAACCTGACATGGGCCAGCAGGATAATGTTCACGGTTTAGACCCAGACACCTGGAAGAAGGTAGATGTGGTTTACATAGACATTGCAGACAGAAGTCAGGTGGAGCCAAAGGACTATAAACCAGAGGAAGACCCTAGTAAGTATAAGTCTGTAAAGACTGGAAGAGGGCCGCTCGGTCCAGATTGGAAGAGAGAGCTACCTAAAAAGACAGACTGCCCACACATGTGTGCCTACAAACTGGTTACTGTCAAGTTCAAGTGGTGGGGCCTGCAAAACAAAGTGGAAAACTTTATTCAAAAGcaagaGAAGCGCTTGTTCACTAACTTCCATCGGCAGCTGTTCTGTTGGATTGATAAATGGATCGAGCTGAACATGGACGACATCCGCAGAATGGAGGAAGAGACCAGGAAGGAATTGGATGAGATGAGAGTGAAGGATCCAGTGAAAGGAATGGTGGCTCTTGAAGACTGAGGTGGCTCTGGATGCTGCTGTTCGTAAAGATCAGACGTGAACTCCTGCAAACCAGCAGCATCGCTCTCCTCAATCAAATCAAAGCAACACGTCTTTTTAATCATAATCAAAGTCCTTCATCCAGCCCTTTTTTCGTGGCCGTTTGTCCTGAGCATCCTTCATATCTTCCTTTCAGTCTGACAATGGAGCACACTGATGAGTTAAATAAGCTGTTATGCTGGTTCAAAAAGTCACGCCCACTTTATAAAGTCTACCTACTTAAACTAATACAGGGACGATCAGCAGTTCGTCATTTATGATGTCAGATCAACACGTGGAGCTCGACAGACTTGTGTTCAGTAAAAAGCTGAtgatatttgtgtgtatatataaatatatattcagaatA
>TCONS_00005123
AAGATATTAAAGAGAACATTGTCCTTTATCATTCTGTGTACCATAGAGGagTATCAAGTCGGGCAGCTATATTCAGTAGCGGAGGCCAGTAAGAACGAGACGGGTGGAGGAGAAGGTGTGGAAGTGCTAAAGAACGAACCCTATGAGAAGGATGGAGAGAAGGGCCAGTACACACACAAAATCTACCACCTGCAGAGTAAAGTCCCATCTTTTGTACGAATGCTTGCACCAGCGTCAGCACTGAACATTCATGAGAAAGCTTGGAACGCCTACCCATACTGCCGcacagTAATAACTAATGAGTACATGAAAGAAAACTTCCTCATCAAGATCGAGACATGGCACAAACCTGACATGGGCCAGCAGGATAATGTTCACGGTTTAGACCCAGACACCTGGAAGAAGGTAGATGTGGTTTACATAGACATTGCAGACAGAAGTCAGGTGGAGCCAAAGGACTATAAACCAGAGGAAGACCCTAGTAAGTATAAGTCTGTAAAGACTGGAAGAGGGCCGCTCGGTCCAGATTGGAAGAGAGAGCTACCTAAAAAGACAGACTGCCCACACATGTGTGCCTACAAACTGGTTACTGTCAAGTTCAAGTGGTGGGGCCTGCAAAACAAAGTGGAAAACTTTATTCAAAAGcaagaGAAGCGCTTGTTCACTAACTTCCATCGGCAGCTGTTCTGTTGGATTGATAAATGGATCGAGCTGAACATGGACGACATCCGCAGAATGGAGGAAGAGACCAGGAAGGAATTGGATGAGATGAGAGTGAAGGATCCAGTGAAAGGAATGGTGGCTCTTGAAGACTGA
>TCONS_00005124
TTTATTAAGGAACATCGAGTGATCCTACCGATTTCTGTGGAGGAGTATCAAGTCGGGCAGCTATATTCAGTAGCGGAGGCCAGTAAGAACGAGACGGGTGGAGGAGAAGGTGTGGAAGTGCTAAAGAACGAACCCTATGAGAAGGATGGAGAGAAGGGCCAGTACACACACAAAATCTACCACCTGCAGAGTAAAGTCCCATCTTTTGTACGAATGCTTGCACCAGCGTCAGCACTGAACATTCATGAGAAAGCTTGGAACGCCTACCCATACTGCCGcacagTAATAACTAATGAGTACATGAAAGAAAACTTCCTCATCAAGATCGAGACATGGCACAAACCTGACATGGGCCAGCAGGATAATGTTCACGGTTTAGACCCAGACACCTGGAAGAAGGTAGATGTGGTTTACATAGACATTGCAGACAGAAGTCAGGTGGAGCCAAAGGACTATAAACCAGAGGAAGACCCTAGTAAGTATAAGTCTGTAAAGACTGGAAGAGGGCCGCTCGGTCCAGATTGGAAGAGAGAGCTACCTAAAAAGACAGACTGCCCACACATGTGTGCCTACAAACTGGTTACTGTCAAGTTCAAGTGGTGGGGCCTGCAAAACAAAGTGGAAAACTTTATTCAAAAGcaagaGAAGCGCTTGTTCACTAACTTCCATCGGCAGCTGTTCTGTTGGATTGATAAATGGATCGAGCTGAACATGGACGACATCCGCAGAATGGAGGAAGAGACCAGGAAGGAATTGGATGAGATGAGAGTGAAGGATCCAGTGAAAGGAATGGTGGCTCTTGAAGACTGA

Function

symbol description
pitpnab Predicted to enable phospholipid binding activity and phospholipid transporter activity. Predicted to act upstream of or within phospholipid transport. Predicted to be active in cytoplasm. Orthologous to human PITPNA (phosphatidylinositol transfer protein alpha).

GO:

id name namespace
GO:0015914 phospholipid transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0005548 phospholipid transporter activity molecular_function
GO:0008525 phosphatidylcholine transporter activity molecular_function
GO:0008526 phosphatidylinositol transfer activity molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:0031210 phosphatidylcholine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110408-51 Predicted to enable phospholipid binding activity and phospholipid transporter activity. Predicted to act upstream of or within phospholipid transport. Predicted to be active in cytoplasm. Orthologous to human PITPNA (phosphatidylinositol transfer protein alpha).

Ensembl:

ensembl_id ENSDARG00000044091

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005122 False 1304 mRNA 0.45 12 24323751 24371312
TCONS_00005123 False 816 mRNA 0.46 10 24325600 24343507
TCONS_00005124 True 810 mRNA 0.47 11 24325600 24362775

Neighbor

gene id symbol gene type direction distance location
XLOC_002765 inpp5kb coding downstream 4225 24302433 ~ 24319526 (-)
XLOC_002764 NA coding downstream 274546 23780542 ~ 24049205 (-)
XLOC_002763 NA coding downstream 773869 23548976 ~ 23549882 (-)
XLOC_002762 NA coding downstream 803508 23518061 ~ 23520243 (-)
XLOC_002761 NA coding downstream 804536 23513122 ~ 23519215 (-)
XLOC_002767 slc43a2b coding upstream 609 24371921 ~ 24391716 (-)
XLOC_002768 CU467963.2 coding upstream 11954 24383266 ~ 24383381 (-)
XLOC_002769 hephl1b coding upstream 22711 24394023 ~ 24416471 (-)
XLOC_002770 AL929315.1 coding upstream 68308 24439620 ~ 24445992 (-)
XLOC_002771 AL929315.2 coding upstream 84304 24455616 ~ 24455732 (-)
XLOC_002751 AL807389.3 non-coding downstream 1571403 22752232 ~ 22752348 (-)
XLOC_002772 NA non-coding upstream 242661 24613973 ~ 24627438 (-)
XLOC_002779 NA non-coding upstream 462384 24833696 ~ 24852525 (-)

Expression


Co-expression Network