G846434


Basic Information

Item Value
gene id G846434
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 2967639 ~ 2969690 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU964227
aacacacacacacaaatacaaacacagacaGGCTCACCATCTCAAAGAGTAGTCTGGCCAGTTTTTCAGAATCTCTATTTGaaggtgagaggggaggagacgTTGAAGAAGGTGGTGCCATACTCTGTAGGTACGGCTTTAGAGAGACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACAACCCTTAACATACTCTGTAGCTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTATGCACGGCTTTAGAGAGACAACCCTTAACATACTCTGTagctgaaagagctgcttcctgtggtTGGccttcctatgttgaacataataaacggctccctatccaccggatttgtaccaaactcactaacaGTGACaataataaagcctctcttgaaaaatccgaaccttgacccagaaaatataaaaaactaatcggcctatatcgaatctcccattcctctcaaattttagaaaaagctgttgcgcagcaactcactgccttcctgaagacaaacaatgtatacgaaatgcttcagtctggttttagaccccatcatagcactgagactgcacttgtgaaggtggtaaattaccttttaatggagtcagaccgaggctctgcatctgttctcgtgcttctagaccttagtgctgcttttgacaccatcgatcaccacattcttttggagagattggaaacccaaattggtctacacggacaagttctggcctggtttagatcttatctgtcagaaagatatcagtttgtctctgtagacggtttgtcctctgacaaatcaactgtacattttggtgttcctcaaggttccgttttaggaccactattgttttcactatatattctacctctt
>TU964228
aacacacacacacaaatacaaacacagacaGGCTCACCATCTCAAAGAGTAGTCTGGCCAGTTTTTCAGAATCTCTATTTGaaggtgagaggggaggagacgTTGAAGAAGGTGGTGCCATACTCTGTAGGTACGGCTTTAGAGAGACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACAACCCTTAACATACTCTGTAGCTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTATGCACGGCTTTAGAGAGACAACCCTTAACATACTCTGTagctgaaagagctgcttcctgtggtTGGccttcctatgttgaacataataaacggctccctatccaccggatttgtaccaaactcactaacaGTGACaataataaagcctctcttgaaaaatccgaaccttgacccagaaaatataaaaaactaatcggcctatatcgaatctcccattcctctcaaattttagaaaaagctgttgcgcagcaactcactgccttcctgaagacaaacaatgtatacgaaatgcttcagtctggttttagaccccatcatagcactgagactgcacttgtgaaggtggtaaattaccttttaatggagtcagaccgaggctctgcatctgttctcgtgcttctagaccttagtgctgcttttgacaccatcgatcaccacattcttttggagagattggaaacccaaattggtctacacggacaagttctggcctggtttagatcttatctgtcagaaagatatcagtttgtctctgtagacggtttgtcctctgacaaatcaactgtacattttggtgttcctcaaggttccgttttaggaccactattgttttcactatatattctacctctt
>TU964234
aacacacacacacaaatacaaacacagacaGGCTCACCATCTCAAAGAGTAGTCTGGCCAGTTTTTCAGAATCTCTATTTGaaggtgagaggggaggagacgTTGAAGAAGGTGGTGCCATACTCTGTAGGTACGGCTTTAGAGAGACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACAACCCTTAACATACTCTGTAGCTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTATGCACGGCTTTAGAGAGACAACCCTTAACATACTCTGTagctgaaagagctgcttcctgtggtTGGccttcctatgttgaacataataaacggctccctatccaccggatttgtaccaaactcactaacaGTGACaataataaagcctctcttgaaaaatccgaaccttgacccagaaaatataaaaaactaatcggcctatatcgaatctcccattcctctcaaattttagaaaaagctgttgcgcagcaactcactgccttcctgaagacaaacaatgtatacgaaatgcttcagtctggttttagaccccatcatagcactgagactgcacttgtgaaggtggtaaattaccttttaatggagtcagaccgaggctctgcatctgttctcgtgcttctagaccttagtgctgcttttgacaccatcgatcaccacattcttttggagagattggaaacccaaattggtctacacggacaagttctggcctggtttagatcttatctgtcagaaagatatcagtttgtctctgtagacggtttgtcctctgacaaatcaactgtacattttggtgttcctcaaggttccgttttaggaccactattgttttcactatatattctacctctt
>TU964236
aacacacacacacaaatacaaacacagacaGGCTCACCATCTCAAAGAGTAGTCTGGCCAGTTTTTCAGAATCTCTATTTGaaggtgagaggggaggagacgTTGAAGAAGGTGGTGCCATACTCTGTAGGTACGGCTTTAGAGAGACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACAACCCTTAACATACTCTGTAGCTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTATGCACGGCTTTAGAGAGACAACCCTTAACATACTCTGTagctgaaagagctgcttcctgtggtTGGccttcctatgttgaacataataaacggctccctatccaccggatttgtaccaaactcactaacaGTGACaataataaagcctctcttgaaaaatccgaaccttgacccagaaaatataaaaaactaatcggcctatatcgaatctcccattcctctcaaattttagaaaaagctgttgcgcagcaactcactgccttcctgaagacaaacaatgtatacgaaatgcttcagtctggttttagaccccatcatagcactgagactgcacttgtgaaggtggtaaattaccttttaatggagtcagaccgaggctctgcatctgttctcgtgcttctagaccttagtgctgcttttgacaccatcgatcaccacattcttttggagagattggaaacccaaattggtctacacggacaagttctggcctggtttagatcttatctgtcagaaagatatcagtttgtctctgtagacggtttgtcctctgacaaatcaactgtacattttggtgttcctcaaggttccgttttaggaccactattgttttcactatatattctacctctt
>TU964237
aacacacacacacaaatacaaacacagacaGGCTCACCATCTCAAAGAGTAGTCTGGCCAGTTTTTCAGAATCTCTATTTGaaggtgagaggggaggagacgTTGAAGAAGGTGGTGCCATACTCTGTAGGTACGGCTTTAGAGAGACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACAACCCTTAACATACTCTGTAGCTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTATGCACGGCTTTAGAGAGACAACCCTTAACATACTCTGTagctgaaagagctgcttcctgtggtTGGccttcctatgttgaacataataaacggctccctatccaccggatttgtaccaaactcactaacaGTGACaataataaagcctctcttgaaaaatccgaaccttgacccagaaaatataaaaaactaatcggcctatatcgaatctcccattcctctcaaattttagaaaaagctgttgcgcagcaactcactgccttcctgaagacaaacaatgtatacgaaatgcttcagtctggttttagaccccatcatagcactgagactgcacttgtgaaggtggtaaattaccttttaatggagtcagaccgaggctctgcatctgttctcgtgcttctagaccttagtgctgcttttgacaccatcgatcaccacattcttttggagagattggaaacccaaattggtctacacggacaagttctggcctggtttagatcttatctgtcagaaagatatcagtttgtctctgtagacggtttgtcctctgacaaatcaactgtacattttggtgttcctcaaggttccgttttaggaccactattgttttcactatatattctacctctt
>TU964233
aacacacacacacaaatacaaacacagacaGGCTCACCATCTCAAAGAGTAGTCTGGCCAGTTTTTCAGAATCTCTATTTGaaggtgagaggggaggagacgTTGAAGAAGGTGGTGCCATACTCTGTAGGTACGGCTTTAGAGAGACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACAACCCTTAACATACTCTGTAGCTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTAGGTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTAGCTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTAGCTACGGCTTTAGAGAGACACAACCCTTAACCTACTCTGTAGCTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTAGCTACGGCTTTAGAGAGACACAACCCTTAACATACTCTGTAGCTACGGCTTTAGAGAGACACAACCCTTAACCTACTCTGTAGCTACGGCTTTAGAGACACAACCCTTAACCTACTCTGTAGCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU964227 False 963 lncRNA 0.43 3 2967639 2969690
TU964228 False 963 lncRNA 0.43 2 2967639 2969690
TU964234 False 1002 lncRNA 0.43 2 2967639 2969690
TU964236 False 1002 lncRNA 0.43 4 2967639 2969690
TU964237 False 1002 lncRNA 0.43 4 2967639 2969690
TU964233 True 576 lncRNA 0.45 3 2968629 2969690

Neighbor

gene id symbol gene type direction distance location
LOC110533230 LOC105028657 coding downstream 571643 2308544 ~ 2395996 (-)
LOC110534809 LOC106590903 coding downstream 749667 2193384 ~ 2217972 (-)
LOC110534810 s47a1 coding downstream 795846 2127694 ~ 2171793 (-)
LOC110534823 NA coding downstream 964165 1897873 ~ 2003474 (-)
LOC110534825 nbea coding downstream 1086733 1597349 ~ 1880906 (-)
LOC110534827 LOC106604014 coding upstream 102190 3071880 ~ 3079986 (-)
LOC110534828 NA coding upstream 122845 3092535 ~ 3093211 (-)
LOC110533269 LOC104929447 coding upstream 181632 3151322 ~ 3153275 (-)
LOC110533270 LOC106604012 coding upstream 219272 3188962 ~ 3190885 (-)
smyd4 smyd4 coding upstream 310998 3280610 ~ 3307832 (-)
G846354 NA non-coding downstream 104069 2863098 ~ 2863570 (-)
G846353 NA non-coding downstream 114915 2848866 ~ 2852724 (-)
G846352 NA non-coding downstream 118492 2846395 ~ 2849147 (-)
G846334 NA non-coding downstream 139477 2827789 ~ 2828162 (-)
G846331 NA non-coding downstream 145465 2821940 ~ 2822174 (-)
G846435 NA non-coding upstream 1669 2971359 ~ 2979647 (-)
G846442 NA non-coding upstream 15202 2984892 ~ 2985236 (-)
G846446 NA non-coding upstream 18957 2988647 ~ 2989090 (-)
G846461 NA non-coding upstream 37986 3007676 ~ 3009665 (-)
G846465 NA non-coding upstream 42540 3012230 ~ 3015357 (-)
G846290 NA other downstream 214536 2748953 ~ 2753103 (-)
G846125 LOC106599738 other downstream 323992 2643309 ~ 2643647 (-)
G845814 NA other downstream 810540 2156390 ~ 2157099 (-)
G845769 NA other downstream 869280 2093235 ~ 2098359 (-)
G845683 NA other downstream 1000567 1966626 ~ 1967072 (-)
G846600 NA other upstream 298059 3267749 ~ 3300488 (-)
G847740 NA other upstream 1446916 4416606 ~ 4419950 (-)

Expression


Co-expression Network