G846465


Basic Information

Item Value
gene id G846465
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 3012230 ~ 3015357 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU964276
GTTTATTAGACTTCAGTGCaacttttgacattatcaataataatctgctgtttaaaaaaaatgtatgtgttatggctttacatcctgtgccatatcgtggattcagagttacctgtctaaaagaacacagagggtggaagagagatggagatactgtaggaggaagagaggaagagagatgagatactgtaagaggaagagaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggatgaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagagatggagatactgtgggaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagaggaagagagatggagatactgtaggagtaagagaggaagagagatggagatactgtaggaggaagagaggaagagagatggagatactgtaggaggacgagaggaagagagatggagatactgtaggaggaagagaggaagagagatggagatactgtaggaggacgagaggaagagagatgagatactgtaagaggaagagaggaagagagatggagatacggtaggaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagaggaagagagatggagatactgtaagaggaagagaggaagagagatggagatactgtaggaggaagagagatggagatactgtatgaggaagagaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagatatggagatactgtaggaggaagagagatggagatactgtaagaggaagagaggaagagagatggagatactgtaggaggaagagagatggggatactgtaggaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagatatggagatactgtaggaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagatatggagatactgtaggaggaagagagatggagatactgtatgaggaagagaggaagagagatggagatactgtaggaggaagagatatggagatactgtaggaggaagagaggaagagagattgaGATACtgtaggagaaagagaagaagagagatggagatactgtaggaggaagagagatggagataatgtaggaggaagagagatggagatactgtaggaggaagagaggaagagagatgagatactgtaggaggaagagagatgagatactgtaggaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagaggaagagagatgagatactgtaggaggaagagagatgagatactgtaggaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagaggaagagacatggggatactgtaggaggaagagaggaagagagatggagatactgtaggaggaagagaggaagagagatggagatactgtaggaggaagagagatggagatactgtAGGAGGACGAGAGATGGGAgatactgtaggaggaagagaagaagagagatggagatgctgtaggaggaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagagattgagatactgtaggaggaagagaagaagagagatggagatactgtaggaggaagagagatggagatactgtaggaggaagagagattgaGATACtgtaggagaaagagaagaagagagatggagatactgtaggaggaagagaggaagagagatggagatactgtaggaggaagagaggaagagagatggagatccTGTAGGAGGAAGACTTAATCGTTCTggctgtctttctctccttccatTCTAAGAGCAGTTAGTCTATTGCCctgcagtcagtgtgtgtgtgtgtg

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU964276 True 2350 lncRNA 0.45 2 3012230 3015357

Neighbor

gene id symbol gene type direction distance location
LOC110533230 LOC105028657 coding downstream 616234 2308544 ~ 2395996 (-)
LOC110534809 LOC106590903 coding downstream 794258 2193384 ~ 2217972 (-)
LOC110534810 s47a1 coding downstream 840437 2127694 ~ 2171793 (-)
LOC110534823 NA coding downstream 1008756 1897873 ~ 2003474 (-)
LOC110534825 nbea coding downstream 1131324 1597349 ~ 1880906 (-)
LOC110534827 LOC106604014 coding upstream 56523 3071880 ~ 3079986 (-)
LOC110534828 NA coding upstream 77178 3092535 ~ 3093211 (-)
LOC110533269 LOC104929447 coding upstream 135965 3151322 ~ 3153275 (-)
LOC110533270 LOC106604012 coding upstream 173605 3188962 ~ 3190885 (-)
smyd4 smyd4 coding upstream 265331 3280610 ~ 3307832 (-)
G846461 NA non-coding downstream 2565 3007676 ~ 3009665 (-)
G846446 NA non-coding downstream 23140 2988647 ~ 2989090 (-)
G846442 NA non-coding downstream 26994 2984892 ~ 2985236 (-)
G846435 NA non-coding downstream 32583 2971359 ~ 2979647 (-)
G846434 NA non-coding downstream 42540 2967639 ~ 2969690 (-)
G846472 NA non-coding upstream 8982 3024339 ~ 3024932 (-)
G846495 NA non-coding upstream 36821 3052178 ~ 3099676 (-)
G846457 NA non-coding upstream 42990 3058347 ~ 3063161 (-)
G846506 NA non-coding upstream 67858 3083215 ~ 3083800 (-)
G846547 NA non-coding upstream 147957 3163314 ~ 3163551 (-)
G846290 NA other downstream 259127 2748953 ~ 2753103 (-)
G846125 LOC106599738 other downstream 368583 2643309 ~ 2643647 (-)
G845814 NA other downstream 855131 2156390 ~ 2157099 (-)
G845769 NA other downstream 913871 2093235 ~ 2098359 (-)
G845683 NA other downstream 1045158 1966626 ~ 1967072 (-)
G846600 NA other upstream 252392 3267749 ~ 3300488 (-)
G847740 NA other upstream 1401249 4416606 ~ 4419950 (-)

Expression


Co-expression Network