G846457


Basic Information

Item Value
gene id G846457
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 3058347 ~ 3063161 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU964263
TGGCGTGGGGTCAGAGGTTAAGGGGGCGGGGGGATGGCGTGGGGTCAGAGGTTAAGGGGGCACATGCGTTCAgtgttgttaaaaaaaaatggctgaagaagagaggagggagaaaggagattTGGAAGAAAATAATTATTTATTCCAGAATGGTTTCTTTACCTTATCTTAGAGTTCAAGACTGATAACTACACTATGAAGAGTGTCCAAACACACTTTTTGATCATTTGAAATAAAAAttcacttccttatgttataaaatacattttaccagGACAAATATGATTATCCATGTTCTGAATCgctcattatatatatatatattatatattttatttttttaagtctgATTTTGTAGCCTAATCCATCCGATAATAAGCACTCTGCCGACATAGAGGTGCAAGGTTTCTCGTAACAACTTCTGAGGATTTAAAATGTTGTGGTCGTTGTCGTCTACCAAGTTGTTTCTACAGGTCgagaaaaaaaatgaattagACGTGAAATAAATGTCAAAAaagatttgaaaaaaaaaagcTCCGTTGACATTTCAGAGACTCGTTTGGTTTTGTGAAAAATAttctaaaaaacattttatttattttttaagaagAGAAATTTAGAATGAATATGAAAAGCGTTAcactaaaatatgaaaatactacACGTCATATCTCTAAACAGATATCTATCTGAATTgtatattgttttatgtcctgcagatgagagagaaagatgagttCAAGGGGAAAAGTGAGTCTGTCAGGTAGCCTTCATTCTCAGACAGCATCGAGCTGACGCCATGTTGTgacattttcaggatttttttggCCCCTTTTGTTTCTCTGGCCTCTGTTGATTTAGTCACCCTAATTCTGACCATCCTACCATGGTAAAAAAAAGTGCAATAACCTTTAAACGGCTCATGATAGAGACATGGAATATTGGAGTATTGGTTTTCTTAGAGGATTATCTACACAATTAACATATTATTTTACCCAATGGTTCAAAAGAGGCGTTTTTGATCGACACCCTACGCTTTGGTcgtagaaaagagagggagggatattctgtctgtctttcccctAGTTCCCAGTCCCCTCGTTCAGGGAGAAAagggaagatggaggagggacattctgtctgtctttcccctAGTTCCTAGTCCCCTCGTTCAGGGAGAAAagggaagatggaggagggacattctgtctttctttccccTAGTTCATAGTCCCCTCGTTCAGGGAGAAAagggaagatggaggagggaCATTCTGTCTTGCTTCTCCTAGTTCAGGAAGGATGAGCGATCTGACAGAAGGAGGAAAGGACTGACTGTCAAAACACAGTCAACAGCatgttattatggccaaacaacaacaaggtggttggttggttggttggttggttggttggttggttggttggtttgtttGTTAGTCAGTCATTGGTTGGAACCTTGGTGGGGTAATAAAACAGTAGTTAATCCATCCATGAACTAGTGGAAGATTTAAGGACAGAAGTGATAGAGGGGGAATCTTCTCTATACACaggagaccgtgtgtgtgtgtgtgtgtgtgtgtgtcagcatgaTAGAGAGACTGCAGGACATCCAGTGTGTTGGTTGGATCCAGGGTGGATGattaaagagggagggaggtgggtattTACAGGATGACACAGCAGTTACTCTCtccagtcttctctctgtttct
>TU964264
GGGTCAGAGGTTAAGGGGGCGGGGGGATGGCGTGGGGTCAGAGGTTAAGGGGGCACATGCGTTCAgtgttgttaaaaaaaaatggctgaagaagagaggagggagaaaggagattTGGAAGAAAATAATTATTTATTCCAGAATGGTTTCTTTACCTTATCTTAGAGTTCAAGACTGATAACTACACTATGAAGAGTGTCCAAACACACTTTTTGATCATTTGAAATAAAAAttcacttccttatgttataaaatacattttaccagGACAAATATGATTATCCATGTTCTGAATCgctcattatatatatatatattatatattttatttttttaagtctgATTTTGTAGCCTAATCCATCCGATAATAAGCACTCTGCCGACATAGAGGTGCAAGGTTTCTCGTAACAACTTCTGAGGATTTAAAATGTTGTGGTCGTTGTCGTCTACCAAGTTGTTTCTACAGGTCgagaaaaaaaatgaattagACGTGAAATAAATGTCAAAAaagatttgaaaaaaaaaagcTCCGTTGACATTTCAGAGACTCGTTTGGTTTTGTGAAAAATAttctaaaaaacattttatttattttttaagaagAGAAATTTAGAATGAATATGAAAAGCGTTAcactaaaatatgaaaatactacACGTCATATCTCTAAACAGATATCTATCTGAATTgtatattgttttatgtcctgcagatgagagagaaagatgagttCAAGGGGAAAAGTGAGTCTGTCAGGTAGCCTTCATTCTCAGACAGCATCGAGCTGACGCCATGTTGTgacattttcaggatttttttggCCCCTTTTGTTTCTCTGGCCTCTGTTGATTTAGTCACCCTAATTCTGACCATCCTACCATGGTAAAAAAAAGTGCAATAACCTTTAAACGGCTCATGATAGAGACATGGAATATTGGAGTATTGGTTTTCTTAGAGGATTATCTACACAATTAACATATTATTTTACCCAATGGTTCAAAAGAGGCGTTTTTGATCGACACCCTACGCTTTGGTcgtagaaaagagagggagggatattctgtctgtctttcccctAGTTCCCAGTCCCCTCGTTCAGGGAGAAAagggaagatggaggagggacattctgtctgtctttcccctAGTTCCTAGTCCCCTCGTTCAGGGAGAAAagggaagatggaggagggacattctgtcttGCTTCTCCTAGTTCAGGAAGGATGAGCGATCTGACAGAAGGAGGAAAGGACTGACTGTCAAAACACAGTCAACAGCatgttattatggccaaacaacaacaaggtggttggttggttggttggttggttggttggttggttggttggtttgtttGTTAGTCAGTCATTGGTTGGAACCTTGGTGGGGTAATAAAACAGTAGTTAATCCATCCATGAACTAGTGGAAGATTTAAGGACAGAAGTGATAGAGGGGGAATCTTCTCTATACACaggagaccgtgtgtgtgtgtgtgtgtgtgtgtgtcagcatgaTAGAGAGACTGCAGGACATCCAGTGTGTTGGTTGGATCCAGGGTGGATGattaaagagggagggaggtgggtattTACAGGATGACACAGCAGTTACTCTCtccagtcttctctctgtttct
>TU964265
TTTGACAGATGTATGTATTCCATGTGAAGTATAGAAGGTCAAGAGAGAAGAAGCATCTAGATTACTATTATTTACAATCTGTTTGAAAAATGATTTTTGATATTATCACTGTACAAGCTTGAAACTCTGATCGCTGAGAAACTATACTCTTTGGGCTACGTCCCAAATCGCATCCTATTCACCTgcgaagtgcactacttttgaccagagccatatgggtagtgcactatgcagggaaatATGATACAATTTGGGACGTATCCTTTAAGACCTAGTGCTgcaagaaagcaaaaaaaataaaaattaaaaataaaaataaggatTATATTAaactatgaacatttgaaaataaaaacagaaaataaaatgAGAAGTATAACATGTTTACAATAATTCTGTACGTCAATGATTAGGAGGATGGTTCTGTTCTGCTGCTTGTTGTCTGCGTCCTAAATTGGCACCTTATttcccctaaatagtgcactactttggaccccGGTCCCTATGTCAGTAAGTAGCCTTGTCTGAGCTAGAAAAGCCCATAAGACAGGAGCGTGAGgtagcttgatgtacaagtacaccctctGGACAGGACGCTAGCCTATCACAGGTTCTACGGGCCacggttgaaagtagtgcactatatatggaaaacGGGAGCCAATCGGAGGGAGGGGGGCGGGACGCAGACCCTGTCACCAAGGTAACGGTTTGAACCACTGTctagaaagctagctagctaacccatggtgtacacacagacactaagATACTGTATCAACATACTGGATCTATAGGCCTCAACTTGTTCAATATAACATTCATATTAAATATATTCTACACATATGGTAActtctttttatatatatatattttttatattaatCCCATTGGAAAAATATAAAATAGAATAACATTTTCTTTTTACAGGTTTTCGATGTGGTGGGCGGCGGAGGGGGGTCCGAGGTTAAGGGGGCGGGGGGATGGCGTGGGGTCAGAGGTTAAGGGGGCGGGGGGATGGCGTGGGGTCAGAGGTTAAGGGGGCGGGGGGATGGCGTGGGGTCAGAGGTTAAGGGGGCACATGCGTTCAgtgttgttaaaaaaaaatggctgaagaagagaggagggagaaaggagattTGGAAGAAAATAATTATTTATTCCAGAATGGTTTCTTTACCTTATCTTAGAGTTCAAGACTGATAACTACACTATGAAGAGTGTCCAAACACACTTTTTGATCATTTGAAATAAAAAttcacttccttatgttataaaatacattttaccagGACAAATATGATTATCCATGTTCTGAATCgctcattatatatatatatattatatattttatttttttaagtctgATTTTGTAGCCTAATCCATCCGATAATAAGCACTCTGCCGACATAGAGGTGCAAGGTTTCTCGTAACAACTTCTGAGGATTTAAAATGTTGTGGTCGTTGTCGTCTACCAAGTTGTTTCTACAGGTCgagaaaaaaaatgaattagACGTGAAATAAATGTCAAAAaagatttgaaaaaaaaaagcTCCGTTGACATTTCAGAGACTCGTTTGGTTTTGTGAAAAATAttctaaaaaacattttatttattttttaagaagAGAAATTTAGAATGAATATGAAAAGCGTTAcactaaaatatgaaaatactacACGTCATATCTCTAAACAGATATCTATCTGAATTgtatattgttttatgtcctgcagatgagagagaaagatgagttCAAGGGGAAAAGTGAGTCTGTCAGGTAGCCTTCATTCTCAGACAGCATCGAGCTGACGCCATGTTGTgacattttcaggatttttttggCCCCTTTTGTTTCTCTGGCCTCTGTTGATTTAGTCACCCTAATTCTGACCATCCTACCATGGTAAAAAAAAGTGCAATAACCTTTAAACGGCTCATGATAGAGACATGGAATATTGGAGTATTGGTTTTCTTAGAGGATTATCTACACAATTAACATATTATTTTACCCAATGGTTCAAAAGAGGCGTTTTTGATCGACACCCTACGCTTTGGTcgtagaaaagagagggagggatattctgtctgtctttcccctAGTTCCCAGTCCCCTCGTTCAGGGAGAAAagggaagatggaggagggacattctgtctgtctttcccctAGTTCCTAGTCCCCTCGTTCAGGGAGAAAagggaagatggaggagggacattctgtctttctttccccTAGTTCATAGTCCCCTCGTTCAGGGAGAAAagggaagatggaggagggaCATTCTGTCTTGCTTCTCCTAGTTCAGGAAGGATGAGCGATCTGACAGAAGGAGGAAAGGACTGACTGTCAAAACACAGTCAACAGCatgttattatggccaaacaacaacaaggtggttggttggttggttggttggttggttggttggttggttggtttgtttGTTAGTCAGTCATTGGTTGGAACCTTGGTGGGGTAATAAAACAGTAGTTAATCCATCCATGAACTAGTGGAAGATTTAAGGACAGAAGTGATAGAGGGGGAATCTTCTCTATACACaggagaccgtgtgtgtgtgtgtgtgtgtgtgtgtcagcatgaTAGAGAGACTGCAGGACATCCAGTGTGTTGGTTGGATCCAGGGTGGATGattaaagagggagggaggtgggtattTACAGGATGACACAGCAGTTACTCTCtccagtcttctctctgtttct
>TU964266
TTTTTTTTATAGAAATTTAGAATGAATATGAAAAGCGTTAcactaaaatatgaaaatactacACGTCATATCTCTAAACAGATATCTATCTGAATTgtatattgttttatgtcctgcagatgagagagaaagatgagttCAAGGGGAAAAGTGAGTCTGTCAGGTAGCCTTCATTCTCAGACAGCATCGAGCTGACGCCATGTTGTgacattttcaggatttttttggCCCCTTTTGTTTCTCTGGCCTCTGTTGATTTAGTCACCCTAATTCTGACCATCCTACCATGGTAAAAAAAAGTGCAATAACCTTTAAACGGCTCATGATAGAGACATGGAATATTGGAGTATTGGTTTTCTTAGAGGATTATCTACACAATTAACATATTATTTTACCCAATGGTTCAAAAGAGGCGTTTTTGATCGACACCCTACGCTTTGGTcgtagaaaagagagggagggatattctgtctgtctttcccctAGTTCCCAGTCCCCTCGTTCAGGGAGAAAagggaagatggaggagggacattctgtctgtctttcccctAGTTCCTAGTCCCCTCGTTCAGGGAGAAAagggaagatggaggagggacattctgtctttctttccccTAGTTCATAGTCCCCTCGTTCAGGGAGAAAagggaagatggaggagggaCATTCTGTCTTGCTTCTCCTAGTTCAGGAAGGATGAGCGATCTGACAGAAGGAGGAAAGGACTGACTGTCAAAACACAGTCAACAGCatgttattatggccaaacaacaacaaggtggttggttggttggttggttggttggttggttggttggttggtttgtttGTTAGTCAGTCATTGGTTGGAACCTTGGTGGGGTAATAAAACAGTAGTTAATCCATCCATGAACTAGTGGAAGATTTAAGGACAGAAGTGATAGAGGGGGAATCTTCTCTATACACaggagaccgtgtgtgtgtgtgtgtgtgtgtgtgtcagcatgaTAGAGAGACTGCAGGACATCCAGTGTGTTGGTTGGATCCAGGGTGGATGattaaagagggagggaggtgggtattTACAGGATGACACAGCAGTTACTCTCtccagtcttctctctgtttct
>TU964267
TTTGACAGATGTATGTATTCCATGTGAAGTATAGAAGGTCAAGAGAGAAGAAGCATCTAGATTACTATTATTTACAATCTGTTTGAAAAATGATTTTTGATATTATCACTGTACAAGCTTGAAACTCTGATCGCTGAGAAACTATACTCTTTGGGCTACGTCCCAAATCGCATCCTATTCACCTgcgaagtgcactacttttgaccagagccatatgggtagtgcactatgcagggaaatATGATACAATTTGGGACGTATCCTTTAAGACCTAGTGCTgcaagaaagcaaaaaaaataaaaattaaaaataaaaataaggatTATATTAaactatgaacatttgaaaataaaaacagaaaataaaatgAGAAGTATAACATGTTTACAATAATTCTGTACGTCAATGATTAGGAGGATGGTTCTGTTCTGCTGCTTGTTGTCTGCGTCCTAAATTGGCACCTTATttcccctaaatagtgcactactttggaccccGGTCCCTATGTCAGTAAGTAGCCTTGTCTGAGCTAGAAAAGCCCATAAGACAGGAGCGTGAGgtagcttgatgtacaagtacaccctctGGACAGGACGCTAGCCTATCACAGGTTCTACGGGCCacggttgaaagtagtgcactatatatggaaaacGGGAGCCAATCGGAGGGAGGGGGGCGGGACGCAGACCCTGTCACCAAGGTAACGGTTTGAACCACTGTctagaaagctagctagctaacccatggtgtacacacagacactaagATACTGTATCAACATACTGGATCTATAGGCCTCAACTTGTTCAATATAACATTCATATTAAATATATTCTACACATATGGTAActtctttttatatatatatattttttatattaatCCCATTGGAAAAATATAAAATAGAATAACATTTTCTTTTTACAGGTTTTCGATGTGGTGGGCGGCGGAGGGGGGTCCGAGGTTAAGGGGGCGGGGGGATGGCGTGGGGTCAGAGGTTAAGGGGGCGGGGGGATGGCGTGGGGTCAGAGGTTAAGGGGGCACATGCGTTCAgtgttgttaaaaaaaaatggctgaagaagagaggagggagaaaggagattTGGAAGAAAATAATTATTTATTCCAGAATGGTTTCTTTACCTTATCTTAGAGTTCAAGACTGATAACTACACTATGAAGAGTGTCCAAACACACTTTTTGATCATTTGAAATAAAAAttcacttccttatgttataaaatacattttaccagGACAAATATGATTATCCATGTTCTGAATCgctcattatatatatatatattatatattttatttttttaagtctgATTTTGTAGCCTAATCCATCCGATAATAAGCACTCTGCCGACATAGAGGTGCAAGGTTTCTCGTAACAACTTCTGAGGATTTAAAATGTTGTGGTCGTTGTCGTCTACCAAGTTGTTTCTACAGGTCgagaaaaaaaatgaattagACGTGAAATAAATGTCAAAAaagatttgaaaaaaaaaagcTCCGTTGACATTTCAGAGACTCGTTTGGTTTTGTGAAAAATAttctaaaaaacattttatttattttttaagaagAGAAATTTAGAATGAATATGAAAAGCGTTAcactaaaatatgaaaatactacACGTCATATCTCTAAACAGATATCTATCTGAATTgtatattgttttatgtcctgcagatgagagagaaagatgagttCAAGGGGAAAAGTGAGTCTGTCAGGTAGCCTTCATTCTCAGACAGCATCGAGCTGACGCCATGTTGTgacattttcaggatttttttggCCCCTTTTGTTTCTCTGGCCTCTGTTGATTTAGTCACCCTAATTCTGACCATCCTACCATGGTAAAAAAAAGTGCAATAACCTTTAAACGGCTCATGATAGAGACATGGAATATTGGAGTATTGGTTTTCTTAGAGGATTATCTACACAATTAACATATTATTTTACCCAATGGTTCAAAAGAGGCGTTTTTGATCGACACCCTACGCTTTGGTcgtagaaaagagagggagggatattctgtctgtctttcccctAGTTCCCAGTCCCCTCGTTCAGGGAGAAAagggaagatggaggagggacattctgtctgtctttcccctAGTTCCTAGTCCCCTCGTTCAGGGAGAAAagggaagatggaggagggacattctgtctttctttccccTAGTTCATAGTCCCCTCGTTCAGGGAGAAAagggaagatggaggagggaCATTCTGTCTTGCTTCTCCTAGTTCAGGAAGGATGAGCGATCTGACAGAAGGAGGAAAGGACTGACTGTCAAAACACAGTCAACAGCatgttattatggccaaacaacaacaaggtggttggttggttggttggttggttggttggttggttggttggtttgtttGTTAGTCAGTCATTGGTTGGAACCTTGGTGGGGTAATAAAACAGTAGTTAATCCATCCATGAACTAGTGGAAGATTTAAGGACAGAAGTGATAGAGGGGGAATCTTCTCTATACACaggagaccgtgtgtgtgtgtgtgtgtgtgtgtgtcagcatgaTAGAGAGACTGCAGGACATCCAGTGTGTTGGTTGGATCCAGGGTGGATGattaaagagggagggaggtgggtattTACAGGATGACACAGCAGTTACTCTCtccagtcttctctctgtttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU964263 False 1715 lncRNA 0.40 2 3058347 3060197
TU964264 False 1639 lncRNA 0.39 2 3058347 3060054
TU964265 False 2733 lncRNA 0.40 2 3058347 3061351
TU964266 False 1115 lncRNA 0.43 2 3058347 3063161
TU964267 True 2699 lncRNA 0.40 2 3058347 3061351

Neighbor

gene id symbol gene type direction distance location
LOC110533230 LOC105028657 coding downstream 662351 2308544 ~ 2395996 (-)
LOC110534809 LOC106590903 coding downstream 840375 2193384 ~ 2217972 (-)
LOC110534810 s47a1 coding downstream 886554 2127694 ~ 2171793 (-)
LOC110534823 NA coding downstream 1054873 1897873 ~ 2003474 (-)
LOC110534825 nbea coding downstream 1177441 1597349 ~ 1880906 (-)
LOC110534827 LOC106604014 coding upstream 8719 3071880 ~ 3079986 (-)
LOC110534828 NA coding upstream 29374 3092535 ~ 3093211 (-)
LOC110533269 LOC104929447 coding upstream 88161 3151322 ~ 3153275 (-)
LOC110533270 LOC106604012 coding upstream 125801 3188962 ~ 3190885 (-)
smyd4 smyd4 coding upstream 217527 3280610 ~ 3307832 (-)
G846472 NA non-coding downstream 33415 3024339 ~ 3024932 (-)
G846465 NA non-coding downstream 42990 3012230 ~ 3015357 (-)
G846461 NA non-coding downstream 48682 3007676 ~ 3009665 (-)
G846446 NA non-coding downstream 69257 2988647 ~ 2989090 (-)
G846442 NA non-coding downstream 73111 2984892 ~ 2985236 (-)
G846506 NA non-coding upstream 20054 3083215 ~ 3083800 (-)
G846547 NA non-coding upstream 100153 3163314 ~ 3163551 (-)
G846567 NA non-coding upstream 200028 3263189 ~ 3263538 (-)
G846600 NA non-coding upstream 204588 3267749 ~ 3300488 (-)
G846614 NA non-coding upstream 248242 3311403 ~ 3311608 (-)
G846290 NA other downstream 305244 2748953 ~ 2753103 (-)
G846125 LOC106599738 other downstream 414700 2643309 ~ 2643647 (-)
G845814 NA other downstream 901248 2156390 ~ 2157099 (-)
G845769 NA other downstream 959988 2093235 ~ 2098359 (-)
G845683 NA other downstream 1091275 1966626 ~ 1967072 (-)
G847740 NA other upstream 1353445 4416606 ~ 4419950 (-)

Expression


Co-expression Network