G847700 (mia)


Basic Information

Item Value
gene id G847700
gene name mia
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 4365779 ~ 4381030 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU965834
gggagaagagagggaggagagatgccTAATATTCTATATCAATTGATTTTGCTGAAAAATTATTCattatgtgcgtgtgtgcgtgcgtgtttgtgtatttgtttgtgtgagtgttCGTGTGTCCACCTACATCAGTCATGACCTCGTTGGTAGCTGGCATGAGAGCGTGTGTCTCCTCGACGACGCTGCTGGGAAAATGTCCCAGTCTTGCCTCCTGTTCCCCGTAGTACGACCCCTGGACCTGGtaaacacacacgtgcacgcacacacagatagAAGAGCTGCCAGCCCAGAACATGTTTCCTCGGTCCTTCAGCAAGGCGTAGACATAGACCACCTGACCCTGACGCAGAGAGATGAAGCGGCAGTCTCCAGGGTAGTAGTCCTCTAAGGCACGCGCTATCAGGATGgggtGGCTACACTCAGCGTCGGCACACATTTTCTTGTTGGAGAGTTTGGGCATCTGTCTTCcggcctgacagacagacacaacacacaaaaacacaacacCCCACAAACACACTCTTCGAGCGGACAtctttctctcctttactctgcttctctctctctgctgctctgctgTCTGAATAGAGGCTAAGAAGgagaggaaaacacacacagctctgttcAGGCC

Function

symbol description
mia Predicted to be involved in extracellular matrix organization. Orthologous to human MIA (MIA SH3 domain containing).

NR:

description
melanoma-derived growth regulatory protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU965834 True 634 lncRNA 0.51 3 4365779 4381030

Neighbor

gene id symbol gene type direction distance location
alg9 alg9 coding downstream 1821 4309807 ~ 4363958 (-)
c10h11orf1 cssa04h11orf1 coding downstream 64095 4286085 ~ 4301684 (-)
LOC110533249 dlat coding downstream 82295 4262779 ~ 4283484 (-)
cfap300 LOC106592925 coding downstream 217470 4140817 ~ 4148309 (-)
LOC110533247 LOC105006428 coding downstream 257847 4088926 ~ 4107932 (-)
kl kl coding upstream 623916 5004946 ~ 5052396 (-)
LOC110533265 rxfp2 coding upstream 763474 5144504 ~ 5280794 (-)
LOC110533267 LOC106604000 coding upstream 1077701 5458731 ~ 5479247 (-)
LOC110534826 LOC106604001 coding upstream 1101165 5482195 ~ 5499373 (-)
LOC110534831 LOC106594356 coding upstream 1274308 5655338 ~ 5661550 (-)
G847705 NA non-coding downstream 42689 4322637 ~ 4323090 (-)
G847567 NA non-coding downstream 225028 4136973 ~ 4140751 (-)
G847588 NA non-coding downstream 255199 4110381 ~ 4110580 (-)
G847587 NA non-coding downstream 255701 4109877 ~ 4110078 (-)
G847586 NA non-coding downstream 259478 4105975 ~ 4106301 (-)
G847725 NA non-coding upstream 5070 4386100 ~ 4388424 (-)
G847741 NA non-coding upstream 33150 4414180 ~ 4416442 (-)
G847740 NA non-coding upstream 35576 4416606 ~ 4419950 (-)
G847759 LOC106591715 non-coding upstream 61035 4442065 ~ 4445313 (-)
G847765 NA non-coding upstream 89313 4470343 ~ 4520394 (-)
G846600 NA other downstream 1065291 3267749 ~ 3300488 (-)
smyd4 smyd4 other downstream 1083906 3280610 ~ 3307832 (-)
LOC110533269 LOC104929447 other downstream 1212556 3151322 ~ 3153275 (-)
LOC110534827 LOC106604014 other downstream 1288272 3071880 ~ 3079986 (-)
G846290 NA other downstream 1612676 2748953 ~ 2753103 (-)
G847774 NA other upstream 186782 4567812 ~ 4569190 (-)
G847843 NA other upstream 355499 4736529 ~ 4741588 (-)
G847861 NA other upstream 429918 4810948 ~ 4812182 (-)
G848149 NA other upstream 760847 5141877 ~ 5142471 (-)

Expression


Co-expression Network