G847741


Basic Information

Item Value
gene id G847741
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 4414180 ~ 4416442 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU965884
ctctctctctctctctctctcagcctcactTTTTTCTATGATGACGGAGGCGATGTTCTTGGAAATCTTGCAAatgaaggttgtgtgtgtgtgtgtgttggtgagtgtgtgtgtatgggtgtctgCATTCAGCGTCAGCCGGTATCCGTAGGGCTCCAGTTGTTCCACGTAGCTATGGTCACGGTAACGCACATCAGGGGAGGAGCCAGACACGTTGGTGTTGACGACAGTCTCCACGGTTCCCGTTGACACGGAGAACTCATAACTGTTGATCTGATTGGCTCTGGCAGACtggGTTCCACATGACAGTCTACTCTCAGAtctccatcctcttcctcacACACCGAGACCAGCTCACAATGAACCACATTCCACAgcactgtgtgtgagagacagagagaaaattaTAGATTAAATATTCATATTTACATATAGTGCCAGAAAGTAC
>TU965882
TATGATGACGGAGGCGATGTTCTTGGAAATCTTGCAAatgaaggttgtgtgtgtgtgtgtgttggtgagtgtgtgtgtatgggtgtctgCATTCAGCGTCAGCCGGTATCCGTAGGGCTCCAGTTGTTCCACGTAGCTATGGTCACGGTAACGCACATCAGGGGAGGAGCCAGACACGTTGGTGTTGACGACAGTCTCCACGGTTCCCGTTGACACGGAGAACTCATAACTGTTGATCTGATTGGCTCTGGCAGACtggGTTCCACATGACAGTCTACTCTCAGAtctccatcctcttcctcacACACCGAGACCAGCTCACAATG
>TU965883
TATGATGACGGAGGCGATGTTCTTGGAAATCTTGCAAatgaaggttgtgtgtgtgtgtgtgttggtgagtgtgtgtgtatgggtgtctgCATTCAGCGTCAGCCGGTATCCGTAGGGCTCCAGTTGTTCCACGTAGCTATGGTCACGGTAACGCACATCAGGGGAGGAGCCAGACACGTTGGTGTTGACGACAGTCTCCACGGTTCCCGTTGACACGGAGAACTCATAACTGTTGATCTGATTGGCTCTGGCAGACAGAATActggGTTCCACATGACAGTCTACTCTCAGAtctccatcctcttcctcacACACCGAGACCAGCTCACAATG
>TU965885
TATGATGACGGAGGCGATGTTCTTGGAAATCTTGCAAatgaaggttgtgtgtgtgtgtgtgttggtgagtgtgtgtgtatgggtgtctgCATTCAGCGTCAGCCGGTATCCGTAGGGCTCCAGTTGTTCCACGTAGCTATGGTCACGGTAACGCACATCAGGGGAGGAGCCAGACACGTTGGTGTTGACGACAGTCTCCACGGTTCCCGTTGACACGGAGAACTCATAACTGTTGATCTGATTGGCTCTGGCAGACAGActggGTTCCACATGACAGTCTACTCTCAGAtctccatcctcttcctcacACACCGAGACCAGCTCACAATG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU965884 False 448 lncRNA 0.48 2 4414180 4416442
TU965882 False 326 lncRNA 0.52 2 4414266 4416406
TU965883 False 333 lncRNA 0.51 2 4414266 4416406
TU965885 True 330 lncRNA 0.52 2 4414266 4416406

Neighbor

gene id symbol gene type direction distance location
alg9 alg9 coding downstream 50222 4309807 ~ 4363958 (-)
c10h11orf1 cssa04h11orf1 coding downstream 112496 4286085 ~ 4301684 (-)
LOC110533249 dlat coding downstream 130696 4262779 ~ 4283484 (-)
cfap300 LOC106592925 coding downstream 265871 4140817 ~ 4148309 (-)
LOC110533247 LOC105006428 coding downstream 306248 4088926 ~ 4107932 (-)
kl kl coding upstream 588504 5004946 ~ 5052396 (-)
LOC110533265 rxfp2 coding upstream 728062 5144504 ~ 5280794 (-)
LOC110533267 LOC106604000 coding upstream 1042289 5458731 ~ 5479247 (-)
LOC110534826 LOC106604001 coding upstream 1065753 5482195 ~ 5499373 (-)
LOC110534831 LOC106594356 coding upstream 1238896 5655338 ~ 5661550 (-)
G847725 NA non-coding downstream 25756 4386100 ~ 4388424 (-)
G847700 mia non-coding downstream 33150 4365779 ~ 4381030 (-)
G847705 NA non-coding downstream 91090 4322637 ~ 4323090 (-)
G847567 NA non-coding downstream 273429 4136973 ~ 4140751 (-)
G847588 NA non-coding downstream 303600 4110381 ~ 4110580 (-)
G847740 NA non-coding upstream 164 4416606 ~ 4419950 (-)
G847759 LOC106591715 non-coding upstream 25623 4442065 ~ 4445313 (-)
G847765 NA non-coding upstream 53901 4470343 ~ 4520394 (-)
G847779 NA non-coding upstream 113724 4530166 ~ 4612241 (-)
G847778 NA non-coding upstream 113956 4530398 ~ 4530823 (-)
G846600 NA other downstream 1113692 3267749 ~ 3300488 (-)
smyd4 smyd4 other downstream 1132307 3280610 ~ 3307832 (-)
LOC110533269 LOC104929447 other downstream 1260957 3151322 ~ 3153275 (-)
LOC110534827 LOC106604014 other downstream 1336673 3071880 ~ 3079986 (-)
G846290 NA other downstream 1661077 2748953 ~ 2753103 (-)
G847774 NA other upstream 151370 4567812 ~ 4569190 (-)
G847843 NA other upstream 320087 4736529 ~ 4741588 (-)
G847861 NA other upstream 394506 4810948 ~ 4812182 (-)
G848149 NA other upstream 725435 5141877 ~ 5142471 (-)

Expression


Co-expression Network