G848000


Basic Information

Item Value
gene id G848000
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 4932862 ~ 4947099 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU966221
ggggttgaggtagatatgatggggttgaggtagatatgatggggttgaggtagatatgatggggttgaggtagatatgatggggttgaggtagttatgatggggttgaggtagttatgatggggttgaggtagatatgatggggttgaggtagatatgatggggttgaggtagttatgatggggttgaggtagatatgatggggttgaggtagatatgatggggttgaggtagatgtg
>TU966223
ggggttgaggtagatatgatggggttgaggtagatatgatggggttgaggtagatatgatggggttgaggtagatatgatggggttgaggtagttatgatggggttgaggtagatatgatggggttgaggtagatatgatggggttgaggtagttatgatggggttgaggtagatatgatggggttgaggtagttatgatggggttgaggtagatgtgttggggttgaggtagatatgatggggttgaggtagttatgatggggttgaggtagatatgatggggttgaggtagatatgatggggttgaggtagatgtg

Function

NR:

description
PREDICTED: tight junction protein ZO-1-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU966221 False 238 lncRNA 0.46 3 4932862 4947099
TU966223 True 318 lncRNA 0.46 4 4932862 4947099

Neighbor

gene id symbol gene type direction distance location
alg9 alg9 coding downstream 568904 4309807 ~ 4363958 (-)
c10h11orf1 cssa04h11orf1 coding downstream 631178 4286085 ~ 4301684 (-)
LOC110533249 dlat coding downstream 649378 4262779 ~ 4283484 (-)
cfap300 LOC106592925 coding downstream 784553 4140817 ~ 4148309 (-)
LOC110533247 LOC105006428 coding downstream 824930 4088926 ~ 4107932 (-)
kl kl coding upstream 57847 5004946 ~ 5052396 (-)
LOC110533265 rxfp2 coding upstream 197405 5144504 ~ 5280794 (-)
LOC110533267 LOC106604000 coding upstream 511632 5458731 ~ 5479247 (-)
LOC110534826 LOC106604001 coding upstream 535096 5482195 ~ 5499373 (-)
LOC110534831 LOC106594356 coding upstream 708239 5655338 ~ 5661550 (-)
G847883 NA non-coding downstream 88879 4843674 ~ 4843983 (-)
G847879 NA non-coding downstream 91276 4841299 ~ 4841586 (-)
G847877 NA non-coding downstream 94859 4837765 ~ 4838003 (-)
G847874 NA non-coding downstream 100538 4832124 ~ 4832324 (-)
G847868 NA non-coding downstream 110053 4822559 ~ 4822809 (-)
G848002 NA non-coding upstream 3497 4950596 ~ 4951222 (-)
G848009 NA non-coding upstream 23367 4970466 ~ 4970765 (-)
G848012 NA non-coding upstream 31089 4978188 ~ 4978402 (-)
G848014 NA non-coding upstream 32051 4979150 ~ 4979440 (-)
G848024 NA non-coding upstream 72234 5019333 ~ 5020958 (-)
G847861 NA other downstream 120680 4810948 ~ 4812182 (-)
G847843 NA other downstream 191274 4736529 ~ 4741588 (-)
G847774 NA other downstream 363672 4567812 ~ 4569190 (-)
G847740 NA other downstream 512912 4416606 ~ 4419950 (-)
smyd4 smyd4 other downstream 1650989 3280610 ~ 3307832 (-)
G848149 NA other upstream 194778 5141877 ~ 5142471 (-)
LOC118966693 NA other upstream 772548 5715285 ~ 5724923 (-)
G848524 LOC106591845 other upstream 792785 5739884 ~ 5822028 (-)
G849438 hpd other upstream 1834524 6778916 ~ 6787520 (-)
G849536 NA other upstream 2067632 7014731 ~ 7015222 (-)

Expression


Co-expression Network