G848328



Basic Information


Item Value
gene id G848328
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 5456224 ~ 5458043 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU966623
gaatgcatctgttggtcaatgTGCCTCCCAATGGGCAACAGGATCTCTTAACGCTattttttgtgcattcaaattgccatcgataaaatacgaATTGTGttggttgtccgtagcttatgccagcccataccataaccccaccaaccaccatggggcactctgttcgcaCAAAACAAAATGGCTGTCCCCTGAAACATGGACCAAGATCTATCCACTTCACCTGAGAGGGGTCGCTGTCCCCTGAAACATGGACCAAGATCTATCCACTTCAACTGAG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU966623 True 277 lncRNA 0.47 2 5456224 5458043

Neighbor


gene id symbol gene type direction distance location
LOC110533265 rxfp2 coding downstream 175430 5144504 ~ 5280794 (-)
kl kl coding downstream 403828 5004946 ~ 5052396 (-)
alg9 alg9 coding downstream 1092266 4309807 ~ 4363958 (-)
c10h11orf1 cssa04h11orf1 coding downstream 1154540 4286085 ~ 4301684 (-)
LOC110533249 dlat coding downstream 1172740 4262779 ~ 4283484 (-)
LOC110533267 LOC106604000 coding upstream 688 5458731 ~ 5479247 (-)
LOC110534826 LOC106604001 coding upstream 24152 5482195 ~ 5499373 (-)
LOC110534831 LOC106594356 coding upstream 197295 5655338 ~ 5661550 (-)
LOC118936911 LOC106597397 coding upstream 203723 5661766 ~ 5664814 (-)
LOC118936905 LOC106603981 coding upstream 207107 5665150 ~ 5704712 (-)
G848318 NA non-coding downstream 27865 5427815 ~ 5428359 (-)
G848312 NA non-coding downstream 37881 5414290 ~ 5418343 (-)
G848224 NA non-coding downstream 138179 5317841 ~ 5318045 (-)
G848147 NA non-coding downstream 312563 5143326 ~ 5143661 (-)
G848055 NA non-coding downstream 320553 5134335 ~ 5135671 (-)
G848304 NA non-coding upstream 3024 5461067 ~ 5461892 (-)
G848333 NA non-coding upstream 11790 5469833 ~ 5477196 (-)
G848344 NA non-coding upstream 34845 5492888 ~ 5493234 (-)
G848302 hmgb1 non-coding upstream 49190 5507233 ~ 5515519 (-)
G848503 NA non-coding upstream 158005 5616048 ~ 5648580 (-)
G848149 NA other downstream 313753 5141877 ~ 5142471 (-)
G847861 NA other downstream 644042 4810948 ~ 4812182 (-)
G847843 NA other downstream 714636 4736529 ~ 4741588 (-)
G847774 NA other downstream 887034 4567812 ~ 4569190 (-)
G847740 NA other downstream 1036274 4416606 ~ 4419950 (-)
LOC118966693 NA other upstream 261604 5715285 ~ 5724923 (-)
G848524 LOC106591845 other upstream 281841 5739884 ~ 5822028 (-)
G849438 hpd other upstream 1323580 6778916 ~ 6787520 (-)
G849536 NA other upstream 1556688 7014731 ~ 7015222 (-)
LOC110533297 LOC106603951 other upstream 1622548 7080591 ~ 7308250 (-)

Expression


G848328 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
End of interactive chart.

G848328 Expression in each Bioproject

Bar chart with 13 bars.
G848328 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network