G848302 (hmgb1)


Basic Information

Item Value
gene id G848302
gene name hmgb1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 5507233 ~ 5515519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU966587
GTCAGAAGCAATTCAGaatctcaacaaaaaaaaaacacaaaaaaaaagcaAATATTTCCTCTTTTATTTCTTTGCGATGACAGTGGTATTGAAATAGTCCAGTAAAATATCTTTATGACAATACGGCGAGTTGataatacatcatttaaaaaacaagaagaCAACAAAACGCACGGGGCCCATCGGAAACAGAAGAACTACGAAGACCCTACATTATAACCAGGTAATGTGCTGCTGTGCACTGCTAGCTAAGGCAAATAGACCCATCGGTTTCCAAGACTaattttttattatatttttttacaaaccgCTTTAAACTgtaacaaatgggggggggggggggcgtccacaaattgcaccctattccctatatagtgatctacttttgacctgagccctattagacctttgtcaaaagtagtacacgAAATAAGGAATAGGATTCCATTTTTTGGACGCAAAGAGACTGGGAGATagaaacacagacagatacaggtgACACTGTTGTAGTGTTAAACTATACAAAAAAAGGGGACAACAACCTGTACAGCTGCAAAACACTTCTTATACACAGCGTTTACGtttttggagggagagaggagagaagagggggggggggggggggtgggggggttcttTTTTTTTGGTAACTTATTCAAGTTTTTTATTTTGTTCTGTGTAAGTGATGCGTGAACAAGAAGGGTTAAATGCTTTATAAACAAGAAATGATAAGCTCTAACAACCACGTGGATCAACGTGGATCTACTCGTCATCGTCGTCGTCGTCATCGTCGTCGTCATCGTCGTCGTCCTCATcatcgtcgtcgtcgtcgtcatCCTTGGTTGGGGCAGCGGCCTTCACGGGCATGCTGACGGGCACCTTGCCCTTGTTGCGATACGCAGTGATGTTCTCGTACTTCTCCTTCAGCTTTGCAGCCTTTTTCTCATAGGGCACCTTGTCTTCCGCTGTTAGGTTGTTCCACTTCTCTCCCAGCTTCTTGGCCACATCACCGATAGACAGGCCAGGGGTCTCCCCCTTCACCTGGGGTCGGAAATCAGCGCAGAAGATGAAGAAAGCAGACGATGGTCTCTTGGGGGCATTGGGGTCCTTaaacctcttcttcttctctccctttgGAGGAATGTagctcctcatctccctctcataACGCACCTTGTCCAGCTTGGCCAGATCCTCAAACTTCCCCTTCTCCTTGGCAGACATGGTCTGAGGGAAGCAGAAGGTGTGATCAGATGtcaacagtttgtgtgtgtgtgtgtgtgtgattgtgtgtgtgattgtgtgtgtgtgtgattgtgagtgtgtgtgtgtgtgattgtgagtgtgtgtgtgtgtgtgattgtgtgtgtgtgtgtgtgattgtgagtgtgtgtgattgtgagtgtgtgtgtgtgtgtgtgtgattgtgagtgtgtgtgagtgtgtgtgattgtgagtgtgagtgtgtgtgtgtgtgattgtgagtgtgtgtgtgtgtgattgtgagtgtgattgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgattgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgattgtgagtgtgtgtgattgtgagtgtgtgtgtgagtgtctgtgattgtgtgtgtgtgtgtgtgtgtgattgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcctgcgtgcgtgtgtgtgtgtgtgtgtgcctgcgtgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattgtgagtgtgtgtgtgtgcctgcgtgcgcgcgcgtgtgtgtgtgtgtgtgtgattgtgtgtgtgtgtgtgtgtgtgtcggttagGTGCTACACAGTGGTAGAGGAACACAACGTAAACAAAACAATGTCATGACAAGGGGTGGCAGATCAGTACGGAACAACTTAGCTGTGACACAGTTCATTTGAAACTATCTCGTACCAGACAACTATCACAGGACTACGAGTGGTACAGGACAGTGTCCACTCAAGGGTTCTGCATCCCAACATGGCACTACCTTTGGCACACTATTCCaatttagtacactactttcaaccagggcccatagggtgctgatcaaaagtagtgcactatatagggaatagggtgctatagtagtgcactatatagggaatggggtgctgatcaaaagtactgcactatatagggaatagggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatatagggaatagggtgctatagtagtgcactataaagggaatggggtgctgatcaaaagtactgcactatatagggaatagggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatatagggaatagggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatatagggaatagggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatatagggtgctatagtagtgcactatatagggaatagggtgctatagtagtgtactatatagggaatggggtgctatagtagtgcactatatagggactagggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatatagggaatagggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatatagggaatagggtgctatagtagtgcactatatagggaatggggtgccatagtggtgcactatatagggaatggggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatataggggatagggtgctatagtagtgcactatagggaatggggtgccatagtagtgcactatatagggaatggggtgctatagtagtgcactatataggggatagggtgctatagtagtgcactatagggaatggggtgccatagtagtgcactatatagggaatggggtgctatagtagtgcactatagggaatggggtgccatagtagtgcactatatagggaatggggtgctatagtagtgcactatatagggaatagggtgctatagtagagcactatatagggaatagggtgctatagtagtgcactatataggggatagggtgctatagtagtgcactatagggaatggggtgccatagtagtgcactatatagggaatggggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatatagggaatagggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatatagggaatagggtgctatagtagcgcactatatagggaatggggtgctatagtagtgcactatatagggaatagggtgctatagtagtgcactatatagggaatagggtgctatagtagtgcactatatagggaatagggtgctatagtagtgcactatatagggaatagggtgctatagtagtgcactatatagggaatagggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatataggggatagggtgctatagtagtgcactatatagggaatggcgtgctatagtagtgcactatatagggaatagggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatatagggaatggggtgctatagtagtgcactatagggaatggggtgctatagtagtgcactatatagggaatagggtgctatagtagtgcactatatagggaatggggtgccatagtagtgcactatatagggaatagggtgctatagtagtgcactatagggaatggggtgctatattagtgcactatatagggaatggggcgCCAGTCAGTCACAGCTGAGATGTGTTCCATACTTACCTTCCATCTCTCAGAGCACTTCTTGGAGAACTCGGAGAAGTTGACGGAAGCTTCCGGGTGTTTCTTCTTGTGCTCCTCTCGACAGGTCTGGACAAAGTAGGCATAGGAGGACATCTTGCCCCTCGGCTTCGTTGGATCTTTCCCCATCTCAATATCGGTAT
>TU966586
GTCAGAAGCAATTCAGaatctcaacaaaaaaaaaacacaaaaaaaaagcaAATATTTCCTCTTTTATTTCTTTGCGATGACAGTGGTATTGAAATAGTCCAGTAAAATATCTTTATGACAATACGGCGAGTTGataatacatcatttaaaaaacaagaagaCAACAAAACGCACGGGGCCCATCGGAAACAGAAGAACTACGAAGACCCTACATTATAACCAGGTAATGTGCTGCTGTGCACTGCTAGCTAAGGCAAATAGACCCATCGGTTTCCAAGACTaattttttattatatttttttacaaaccgCTTTAAACTgtaacaaatgggggggggggggggcgtccacaaattgcaccctattccctatatagtgatctacttttgacctgagccctattagacctttgtcaaaagtagtacacgAAATAAGGAATAGGATTCCATTTTTTGGACGCAAAGAGACTGGGAGATagaaacacagacagatacaggtgACACTGTTGTAGTGTTAAACTATACAAAAAAAGGGGACAACAACCTGTACAGCTGCAAAACACTTCTTATACACAGCGTTTACGtttttggagggagagaggagagaagagggggggggggggggggtgggggggttcttTTTTTTTGGTAACTTATTCAAGTTTTTTATTTTGTTCTGTGTAAGTGATGCGTGAACAAGAAGGGTTAAATGCTTTATAAACAAGAAATGATAAGCTCTAACAACCACGTGGATCAACGTGGATCTACTCGTCATCGTCGTCGTCGTCATCGTCGTCGTCATCGTCGTCGTCCTCATcatcgtcgtcgtcgtcgtcatCCTTGGTTGGGGCAGCGGCCTTCACGGGCATGCTGACGGGCACCTTGCCCTTGTTGCGATACGCAGTGATGTCCTTCTCGTACTTCTCCTTCAGCTTTGCAGCCTTTTTCTCATAGGGCACCTTGTCTTCCGCTGTTAGGTTGTTCCACTTCTCTCCCAGCTTCTTGGCCACATCACCGATAGACAGGCCAGGGGTCTCCCCCTTCACCTGGGGTCGGAAATCAGCGCAGAAGATGAAGAAAGCAGACCTGGAGGacgggaggagaagaagaagaacaggagagagga

Function

symbol description
hmgb1 Enables several functions, including DNA binding activity; DNA polymerase binding activity; and lipopolysaccharide binding activity. Involved in several processes, including positive regulation of MAPK cascade; positive regulation of macromolecule metabolic process; and regulation of cell migration. Located in several cellular components, including cell surface; condensed chromosome; and extracellular space. Part of alphav-beta3 integrin-HMGB1 complex and transcription repressor complex. Implicated in amyotrophic lateral sclerosis. Biomarker of Kawasaki disease; cerebral infarction; congestive heart failure; and systemic scleroderma.

NR:

description
high mobility group-T protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU966587 False 4478 lncRNA 0.45 4 5507233 5515519
TU966586 True 1124 lncRNA 0.45 2 5511561 5515519

Neighbor

gene id symbol gene type direction distance location
LOC110534826 LOC106604001 coding downstream 7860 5482195 ~ 5499373 (-)
LOC110533267 LOC106604000 coding downstream 27986 5458731 ~ 5479247 (-)
LOC110533265 rxfp2 coding downstream 226439 5144504 ~ 5280794 (-)
kl kl coding downstream 454837 5004946 ~ 5052396 (-)
alg9 alg9 coding downstream 1143275 4309807 ~ 4363958 (-)
LOC110534831 LOC106594356 coding upstream 139819 5655338 ~ 5661550 (-)
LOC118936911 LOC106597397 coding upstream 146247 5661766 ~ 5664814 (-)
LOC118936905 LOC106603981 coding upstream 149631 5665150 ~ 5704712 (-)
LOC110533273 LOC106591344 coding upstream 191271 5706790 ~ 5714323 (-)
LOC118966693 NA coding upstream 199766 5715285 ~ 5724923 (-)
G848344 NA non-coding downstream 13999 5492888 ~ 5493234 (-)
G848333 NA non-coding downstream 30037 5469833 ~ 5477196 (-)
G848304 NA non-coding downstream 45341 5461067 ~ 5461892 (-)
G848328 NA non-coding downstream 49190 5456224 ~ 5458043 (-)
G848318 NA non-coding downstream 78874 5427815 ~ 5428359 (-)
G848503 NA non-coding upstream 100529 5616048 ~ 5648580 (-)
G848508 NA non-coding upstream 102678 5618197 ~ 5622484 (-)
G848547 NA non-coding upstream 172520 5688039 ~ 5688368 (-)
G848548 NA non-coding upstream 173484 5689003 ~ 5689207 (-)
G848551 NA non-coding upstream 184407 5699926 ~ 5700215 (-)
G848149 NA other downstream 364762 5141877 ~ 5142471 (-)
G847861 NA other downstream 695051 4810948 ~ 4812182 (-)
G847843 NA other downstream 765645 4736529 ~ 4741588 (-)
G847774 NA other downstream 938043 4567812 ~ 4569190 (-)
G847740 NA other downstream 1087283 4416606 ~ 4419950 (-)
G848524 LOC106591845 other upstream 224365 5739884 ~ 5822028 (-)
G849438 hpd other upstream 1266104 6778916 ~ 6787520 (-)
G849536 NA other upstream 1499212 7014731 ~ 7015222 (-)
LOC110533297 LOC106603951 other upstream 1565072 7080591 ~ 7308250 (-)

Expression


Co-expression Network