G848634 (pcbd2)


Basic Information

Item Value
gene id G848634
gene name pcbd2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 5918240 ~ 5931386 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU967000
TTTCTAACATACTGACCTAAAACTGGGCTTGGGGGGTTCAGAATTAGGTTGATGGTGTTAACTTTATTGTTAAGAGGATGAGGGTGTGGatgagaggttagaggtcagagttcACACCTGATTAAAGGTTTTGAAGTGGAGCTCTTTGTAGATGGCATCCcgctcctccacctctacccagcCAGTAGCCTTCAGCTCCATTAGCAGCTGTTCTCTGTCAACTGGGGGCAACCAGTTGGGGTCTCCAGAcattttggatatatatctgGGCAGTAGTACGTTGCCCAGTCTCTGATATGCACACGGCCATACACTGCTAGCCCTGAGAGTAAACATTAACCCATGCATAACATTTGGTCAACAGATCTATCCTCGTGCCCTGTCCCCGCTCACAAGTAGTCAACCTAGCgtttaaaaaaaagtttccactagatagcacagccacaaagtataAATTGGCTATATCGTCAATAATTATCAAATTGAAATGTAGCTTTTTGTTCTTAATTTAAGGTTGTGGTAAGGCAtacggttagcagt
>TU967001
CAGTGGTCCGCGGACCCCACTTTGAGAACCCCTGGCCTAGGCCAGTGTTCTATTTAATGATTCATTCCAACTGTAAGATAGAATTACATCATGAATGTGCATTTCATGAAAATGATTAGGCCTACACATTATAAtggatacatttttatttgaaataGAAAGTTGTACGACAATCGTGTGACATATACAGGAGGAACATCTACATGGACAAGGTAACTTTGTCAATAAACTTGGCCATCTTGATATCCCGTTTGGACAATCCTCCACAGTCATGCGTAGTTAGTGTTATCTGGACCTTGTTATAAACGTTGAACCACTCTGGATGGTGGTTCATCTTCTCTGCTTGCAAAGCCACTCGGGACATGAAGCCAAAGGCCTGATTAAAGGTTTTGAAGTGGAGCTCTTTGTAGATGGCATCCcgctcctccacctctacccagcCAGTAGCCTTCAGCTCCATTAGCAGCTGTTCTCTGTCAACTGGGGGCAACCAGTTGGGGTCTCCAGAcattttggatatatatctgGGCAGTAGTACGTTGCCCAGTCTCTGATATGCACACGGCCATACACTGCTAGCCCTGAGAGTAAACATTAACCCATGCATAACATTTGGTCAACAGATCTATCCTCGTGCCCTGTCCCCGCTCACAAGTAGTCAACCTAGCgtttaaaaaaaagtttccactagatagcacagccacaaagtataAATTGGCTATATCGTCAATAATTATCAAATTGAAATGTAGCTTTTTGTTCTTAATTTAAGGTTGTGGTAAGGCAtacggttagcagt

Function

symbol description
pcbd2 Predicted to enable 4-alpha-hydroxytetrahydrobiopterin dehydratase activity. Involved in positive regulation of transcription, DNA-templated. Predicted to be located in nucleus.

NR:

description
pterin-4-alpha-carbinolamine dehydratase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU967000 False 540 lncRNA 0.44 2 5918240 5920239
TU967001 True 799 lncRNA 0.43 4 5918240 5931386

Neighbor

gene id symbol gene type direction distance location
LOC110533283 NA coding downstream 48720 5866048 ~ 5869520 (-)
LOC118937089 NA coding downstream 50142 5868024 ~ 5868098 (-)
LOC118937090 NA coding downstream 50450 5867715 ~ 5867790 (-)
LOC118937091 NA coding downstream 50921 5867245 ~ 5867319 (-)
LOC118937088 NA coding downstream 51203 5866959 ~ 5867037 (-)
pitx1 pitx1 coding upstream 28851 5960237 ~ 5971002 (-)
LOC110533286 LOC106603967 coding upstream 221298 6152684 ~ 6176005 (-)
larp1 LOC106603968 coding upstream 267136 6198522 ~ 6256673 (-)
sap30l LOC106603970 coding upstream 421411 6352797 ~ 6361051 (-)
LOC110533288 ggnbp2 coding upstream 430506 6361892 ~ 6376512 (-)
G848624 NA non-coding downstream 53457 5864444 ~ 5864783 (-)
G848617 NA non-coding downstream 70906 5846403 ~ 5847334 (-)
G848563 NA non-coding downstream 99422 5738694 ~ 5818818 (-)
G848522 NA non-coding downstream 117074 5764380 ~ 5801166 (-)
G848643 catsper3 non-coding upstream 5380 5936766 ~ 5937242 (-)
G848646 NA non-coding upstream 11289 5942675 ~ 5942890 (-)
G848647 NA non-coding upstream 11686 5943072 ~ 5943529 (-)
G848664 NA non-coding upstream 27818 5959204 ~ 5959529 (-)
G848675 NA non-coding upstream 53414 5984800 ~ 5985013 (-)
G848524 LOC106591845 other downstream 96212 5739884 ~ 5822028 (-)
LOC118966693 NA other downstream 193430 5715285 ~ 5724923 (-)
G848149 NA other downstream 775769 5141877 ~ 5142471 (-)
G847861 NA other downstream 1106058 4810948 ~ 4812182 (-)
G847843 NA other downstream 1176652 4736529 ~ 4741588 (-)
G849438 hpd other upstream 850237 6778916 ~ 6787520 (-)
G849536 NA other upstream 1083345 7014731 ~ 7015222 (-)
LOC110533297 LOC106603951 other upstream 1149205 7080591 ~ 7308250 (-)
G849864 LOC106603950 other upstream 1509517 7400883 ~ 7443617 (-)
G850323 NA other upstream 1809916 7741302 ~ 7746624 (-)

Expression


Co-expression Network