G848643 (catsper3)



Basic Information


Item Value
gene id G848643
gene name catsper3
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 5936766 ~ 5937242 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU967013
CATCAGGAGAAACATCAGGCCCAGGACATATACCACACTCTTCATGGTCTTGAATAGAGCTACAACCAAGGCCTGTCAatcaaacaaaaacacaacaaaagagagagaacacTAAAAATCTCTACAAACCTGACAAACCTTATCCACCGTCACACTCTAAAAAAGGTAATCCAAAGACCAACGTAACAGACACATGTGTATGGCCAAGTATTGTAGCACTAATTGCGTCATTCTCACCTGCAGGCCCCGAATGAAGGACACAGTCTTCAGCACGCGCAAAGAGCGAAAAGCGCGGACGATGCGCATGGTCCCCATTGCACTGGAGTCCCCTCCATCAGCGAACATGGGAACGAATGAAATGACCAAAATAATAGCGTCGAAAACATTGTAGCCATTTTTCCAGTAAACCCCTGGGTTAACGTATACCTTCATCAAGAACTCCATGGTGTAAATGGCCATGAAGAATTCGTCTGCAAT

Function


symbol description
catsper3 Predicted to enable voltage-gated calcium channel activity. Predicted to be involved in flagellated sperm motility; sodium ion transport; and sperm capacitation. Predicted to be located in plasma membrane. Predicted to be part of CatSper complex. Predicted to be active in acrosomal vesicle.

NR:

description
cation channel sperm-associated protein 3

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU967013 True 477 lncRNA 0.45 1 5936766 5937242

Neighbor


gene id symbol gene type direction distance location
LOC110533283 NA coding downstream 67246 5866048 ~ 5869520 (-)
LOC118937089 NA coding downstream 68668 5868024 ~ 5868098 (-)
LOC118937090 NA coding downstream 68976 5867715 ~ 5867790 (-)
LOC118937091 NA coding downstream 69447 5867245 ~ 5867319 (-)
LOC118937088 NA coding downstream 69729 5866959 ~ 5867037 (-)
pitx1 pitx1 coding upstream 22995 5960237 ~ 5971002 (-)
LOC110533286 LOC106603967 coding upstream 215442 6152684 ~ 6176005 (-)
larp1 LOC106603968 coding upstream 261280 6198522 ~ 6256673 (-)
sap30l LOC106603970 coding upstream 415555 6352797 ~ 6361051 (-)
LOC110533288 ggnbp2 coding upstream 424650 6361892 ~ 6376512 (-)
G848634 pcbd2 non-coding downstream 5380 5918240 ~ 5931386 (-)
G848624 NA non-coding downstream 71983 5864444 ~ 5864783 (-)
G848617 NA non-coding downstream 89432 5846403 ~ 5847334 (-)
G848563 NA non-coding downstream 117948 5738694 ~ 5818818 (-)
G848646 NA non-coding upstream 5433 5942675 ~ 5942890 (-)
G848647 NA non-coding upstream 5830 5943072 ~ 5943529 (-)
G848664 NA non-coding upstream 21962 5959204 ~ 5959529 (-)
G848675 NA non-coding upstream 47558 5984800 ~ 5985013 (-)
G848682 NA non-coding upstream 56008 5993250 ~ 5993770 (-)
G848524 LOC106591845 other downstream 114738 5739884 ~ 5822028 (-)
LOC118966693 NA other downstream 211956 5715285 ~ 5724923 (-)
G848149 NA other downstream 794295 5141877 ~ 5142471 (-)
G847861 NA other downstream 1124584 4810948 ~ 4812182 (-)
G847843 NA other downstream 1195178 4736529 ~ 4741588 (-)
G849438 hpd other upstream 844381 6778916 ~ 6787520 (-)
G849536 NA other upstream 1077489 7014731 ~ 7015222 (-)
LOC110533297 LOC106603951 other upstream 1143349 7080591 ~ 7308250 (-)
G849864 LOC106603950 other upstream 1503661 7400883 ~ 7443617 (-)
G850323 NA other upstream 1804060 7741302 ~ 7746624 (-)

Expression



Co-expression Network