Item | Value |
---|---|
gene id | G848643 |
gene name | catsper3 |
gene type | non-coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048574.1 |
NCBI id | CM023228.2 |
chromosome length | 87811138 |
location | 5936766 ~ 5937242 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
catsper3 | Predicted to enable voltage-gated calcium channel activity. Predicted to be involved in flagellated sperm motility; sodium ion transport; and sperm capacitation. Predicted to be located in plasma membrane. Predicted to be part of CatSper complex. Predicted to be active in acrosomal vesicle. |
description |
---|
cation channel sperm-associated protein 3 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU967013 | True | 477 | lncRNA | 0.45 | 1 | 5936766 | 5937242 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110533283 | NA | coding | downstream | 67246 | 5866048 ~ 5869520 (-) |
LOC118937089 | NA | coding | downstream | 68668 | 5868024 ~ 5868098 (-) |
LOC118937090 | NA | coding | downstream | 68976 | 5867715 ~ 5867790 (-) |
LOC118937091 | NA | coding | downstream | 69447 | 5867245 ~ 5867319 (-) |
LOC118937088 | NA | coding | downstream | 69729 | 5866959 ~ 5867037 (-) |
pitx1 | pitx1 | coding | upstream | 22995 | 5960237 ~ 5971002 (-) |
LOC110533286 | LOC106603967 | coding | upstream | 215442 | 6152684 ~ 6176005 (-) |
larp1 | LOC106603968 | coding | upstream | 261280 | 6198522 ~ 6256673 (-) |
sap30l | LOC106603970 | coding | upstream | 415555 | 6352797 ~ 6361051 (-) |
LOC110533288 | ggnbp2 | coding | upstream | 424650 | 6361892 ~ 6376512 (-) |
G848634 | pcbd2 | non-coding | downstream | 5380 | 5918240 ~ 5931386 (-) |
G848624 | NA | non-coding | downstream | 71983 | 5864444 ~ 5864783 (-) |
G848617 | NA | non-coding | downstream | 89432 | 5846403 ~ 5847334 (-) |
G848563 | NA | non-coding | downstream | 117948 | 5738694 ~ 5818818 (-) |
G848646 | NA | non-coding | upstream | 5433 | 5942675 ~ 5942890 (-) |
G848647 | NA | non-coding | upstream | 5830 | 5943072 ~ 5943529 (-) |
G848664 | NA | non-coding | upstream | 21962 | 5959204 ~ 5959529 (-) |
G848675 | NA | non-coding | upstream | 47558 | 5984800 ~ 5985013 (-) |
G848682 | NA | non-coding | upstream | 56008 | 5993250 ~ 5993770 (-) |
G848524 | LOC106591845 | other | downstream | 114738 | 5739884 ~ 5822028 (-) |
LOC118966693 | NA | other | downstream | 211956 | 5715285 ~ 5724923 (-) |
G848149 | NA | other | downstream | 794295 | 5141877 ~ 5142471 (-) |
G847861 | NA | other | downstream | 1124584 | 4810948 ~ 4812182 (-) |
G847843 | NA | other | downstream | 1195178 | 4736529 ~ 4741588 (-) |
G849438 | hpd | other | upstream | 844381 | 6778916 ~ 6787520 (-) |
G849536 | NA | other | upstream | 1077489 | 7014731 ~ 7015222 (-) |
LOC110533297 | LOC106603951 | other | upstream | 1143349 | 7080591 ~ 7308250 (-) |
G849864 | LOC106603950 | other | upstream | 1503661 | 7400883 ~ 7443617 (-) |
G850323 | NA | other | upstream | 1804060 | 7741302 ~ 7746624 (-) |