G849404


Basic Information

Item Value
gene id G849404
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 6682937 ~ 6684519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU967909
CAACCACGGTCACCTACTCCCACTAGTGAATCAACCACGGTCACCTACTCCCACTAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCACCCAAGATAAAGCTCACACACTCCAAAAAAACAGCATTGCCTGATGGTTGTTCTACAAAGTCCCAAAAAAAGC
>TU967911
CAACCACGGTCACCTACTCCCACTAGTGAATCAACCACGGTCACCTACTCCCACTAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCAACCACGGTCACCTACTCCCACTAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCACCCAAGATAAAGCTCACACACTCCAAAAAAACAGCATTGCCTGATGGTTGTTCTACAAAGTCCCAAAAAAAGC
>TU967912
GTGCGTCACAAGTTTAAAAGTCTTCGTGGCGTGTGGGACCACCTTAATCCTAATCACTGTAATATACACAAAACTTTCCAATCACTGCTGGAGTATGTATTCAATGAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCACCCAAGATAAAGCTCACACACTCCAAAAAAACAGCATTGCCTGATGGTTGTTCTACAAAGTCCCAAAAAAAGC
>TU967913
GTGCGTCACAAGTTTAAAAGTCTTCGTGGCGTGTGGGACCACCTTAATCCTAATCACTGTAATATACACAAAACTTTCCAATCACTGCTGGAGTATGTATTCAATGAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCAACCACGGTCACCTACTCCCACTAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCAACCACCGACACCTACTCCCACTAGTGAATCACCCAAGATAAAGCTCACACACTCCAAAAAAACAGCATTGCCTGATGGTTGTTCTACAAAGTCCCAAAAAAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU967909 False 292 lncRNA 0.49 2 6682937 6684189
TU967911 False 323 lncRNA 0.49 2 6682937 6684189
TU967912 False 312 lncRNA 0.45 2 6682937 6684519
TU967913 True 405 lncRNA 0.46 3 6682937 6684519

Neighbor

gene id symbol gene type direction distance location
LOC110534837 LOC106603953 coding downstream 42090 6624263 ~ 6640847 (-)
LOC110533291 LOC106603975 coding downstream 225269 6429933 ~ 6457668 (-)
LOC110533295 LOC105008281 coding downstream 278601 6403217 ~ 6404336 (-)
znhit3 znhit3 coding downstream 281518 6399723 ~ 6401419 (-)
pigw pigw coding downstream 300552 6379587 ~ 6382385 (-)
LOC118966698 rnf43 coding upstream 124482 6809001 ~ 7034472 (-)
LOC118966699 NA coding upstream 318440 7002865 ~ 7006459 (-)
LOC118966700 NA coding upstream 323401 7007920 ~ 7014182 (-)
LOC118966702 NA coding upstream 324921 7009440 ~ 7011035 (-)
hsf5 LOC106603959 coding upstream 351679 7036198 ~ 7041922 (-)
G849368 NA non-coding downstream 32499 6648774 ~ 6650438 (-)
G849389 NA non-coding downstream 61220 6621498 ~ 6621717 (-)
G849385 NA non-coding downstream 66278 6615968 ~ 6616659 (-)
G849360 NA non-coding downstream 88926 6593322 ~ 6594011 (-)
G849375 NA non-coding upstream 5041 6689560 ~ 6690333 (-)
G849406 NA non-coding upstream 14763 6699282 ~ 6701227 (-)
G849369 NA non-coding upstream 27051 6711570 ~ 6712282 (-)
G849412 NA non-coding upstream 46658 6731177 ~ 6731867 (-)
G849438 hpd non-coding upstream 94397 6778916 ~ 6787520 (-)
G848524 LOC106591845 other downstream 860909 5739884 ~ 5822028 (-)
LOC118966693 NA other downstream 958127 5715285 ~ 5724923 (-)
G848149 NA other downstream 1540466 5141877 ~ 5142471 (-)
G847861 NA other downstream 1870755 4810948 ~ 4812182 (-)
G847843 NA other downstream 1941349 4736529 ~ 4741588 (-)
G849536 NA other upstream 330212 7014731 ~ 7015222 (-)
LOC110533297 LOC106603951 other upstream 396072 7080591 ~ 7308250 (-)
G849864 LOC106603950 other upstream 756384 7400883 ~ 7443617 (-)
G850323 NA other upstream 1056783 7741302 ~ 7746624 (-)

Expression


Co-expression Network