G849438 (hpd)


Basic Information

Item Value
gene id G849438
gene name hpd
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 6778916 ~ 6787520 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU967952
TGCGTTGTATCCGGGCAGAAACAGGCCTTTGTAGGGACTCAGGTACTCAATGAGAGTGTGTGTTGTATCACCATAcGTCTGAACGACAGCACACTTGACTTTGCCGTAGCTATCTTGCTCAATCCAAGGCTCCTTGACCACCACCGCTCCTCGTTCTTTAGCTTTCTTGATTAAGAATTCAAGGTCCTCCACTTGGAAAGCAATGTCTTTGACCCCATCCCCGTGCTTCATCAAGTGTTCCCCCATTTCTTCATTTCCTGGATTCAGAGCAGATTCGAAGACAAATAATATCTTATCCTGTTTAATGACATGGGACACCACCTCTCGGCTGCCGGTCTCCAGACCCTTGTAGGCCACTGGCTCAAAGCCCATCTTGTCACAGTAGAACACAGCCGCCTGTTTGGCATTGCCCACCCAAAAGGTCACGTGGTGGAACTTTACGAATTTTCCCTTCTCGGGCTTCTCCCCTTTATCTGTGTAGGTAGTCATGCTATGGTTCTGTCCGGACAGAGATGACTGAtcaagaggagagaagagaga
>TU967954
TGGTTGGTTTCCCACAATGTGATCGATGAAGTTCAGGAGTCCTGGCGGCAGTTTGGGTAGCAGGCAGTCCTTTACCACAGGTGCGTTGTATCCGGGCAGAAACAGGCCTTTGTAGGGACTCAGGTACTCAATGAGAGTGTGTGTTGTATCACCATGTCTGAACGACAGCACACTTGACTTTGCCGTAGCTATCTTGCTCAATCCAAGGCTCCTTGACCACCACCGCTCCTCGTTCTTTAGCTTTCTGCAAACAGTCACAGGACAGATAGCCAGTACACATTACCGAGAAAGCACCTACCCGGTTATCACTCCACCTACCCGGTTATCACTCCACCTACCCGGTTATCACTCCACCTACCCGGTTATCACTCCACCTAACCGGTTATCACTCCACCTACCCGGTTATCACTCCACCTAACCCGGTTATCACTCCACCTACCCGGTTATCACTCCACCTACCCGGTTATCACTCCACCTAACCCGGTTATCACTCCACCTACCCGGTTATCATTCCACCTACCCGGTTATCACTCCACCTAACCCGGTTATCACTCCACCTACCCGGTCATCACTCCACCTACCCGGTTATCACTCCACCTAACCGGTTATCACTCCACCTAACCGGTTATCACTCCACCACACAGCTCCAGACACGCTGCAGCTGCTTTCCCAGTTTGGTTAAAAGTAGAAACATCTCTTTGTTATATTGTGAATGATCCTCTATGTTGCTTTGGCTACGTGTGTTTTATTTGAGAGAAAtgatgggagagaaagaaagagaaaggttGCTGTCTCTCTGCACATTCAATGACAGCAGATTTCTTTGTGGGGCATATTTTTTACTCACCTTGATTAAGAATTCAAGGTCCTCCACTTGGAAAGCAATGTCTTTGACCCCATCCCCGTGCTTCATCAAGTGTTCCCCCATTTCTGAGAGAAAAGAAAACTTTTGAAACAATAAACTTATATGACTGACGGTCGATCTTTCATACCAGGTCTATATCAGAAATGTAGCCATTTAAAGATGTTGACTAGGAGAAGAAGAAACCTGCCTTCATTTCCTGGATTCAGAGCAGATTCGAAGACAAATAATATCTGGGGGGGAGGAATAAAGAACAACGAGGTCGATACTTCATCTGATGAAGGTAGTAAAGTCAGTCAAAGTTGGAGTTTTAAAAACTCGAGACCACAATCACGGGCCAGTTTCACAGACACGGCCTTGTCTAGTCTTGGGACTAGGAAGACTTTAATGTGGGTCAGAGAAAGGCGGTTCTACGTTTGCAGAAGTGGGCACACTACCTTATCCTGTTTAATGACATGGGACACCACCTCTCGGCTGCCGGTCTCCAGACCCTTGTAGGCCACTGGCTCAAAGCCCATCTTGTCACAGTAGAACACAGCCGCCTGCATAGAGAATTCATAAGGATTTCATAACACATTAATAACCCATACTGAACATATTAATATcccatacataacccatacataacacattaaTAACCCATATATAACATATTAATATcccatacataacccatacataacacattaaTAACTCATATATAACATATTAATATcccatacataacccatacataacacattaatatcccattcataacacattaataACCCATACTGAACATATTAATATcccatacataacccatacataacccatacataacccattaataacccattcataacccatacataacccatacataatccattcataacccatacataacccctTGATAACCCATtaataacccattcataacccatacataacccattcataacccatacataacccatt
>TU967953
TGGTTGGTTTCCCACAATGTGATCGATGAAGTTCAGGAGTCCTGGCGGCAGTTTGGGTAGCAGGCAGTCCTTTACCACAGGTGCGTTGTATCCGGGCAGAAACAGGCCTTTGTAGGGACTCAGGTACTCAATGAGAGTGTGTGTTGTATCACCATACTAGAGGAAGATGGGTAAGGAAGCTGTTCATTAAGAATTACAGTACCTCAACTGCATCaggtcaaatgtatttacaatgagagagagagagagagagaga

Function

symbol description
hpd Enables 4-hydroxyphenylpyruvate dioxygenase activity. Acts upstream of or within tyrosine catabolic process. Located in extracellular exosome. Implicated in hawkinsinuria and tyrosinemia type III.

NR:

description
4-hydroxyphenylpyruvate dioxygenase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU967952 False 540 lncRNA 0.49 8 6778916 6787235
TU967954 False 1825 TUCP 0.44 6 6781623 6787520
TU967953 True 256 lncRNA 0.46 2 6787061 6787520

Neighbor

gene id symbol gene type direction distance location
LOC110519104 mtmr4 coding downstream 15175 6651327 ~ 6763741 (-)
LOC110534837 LOC106603953 coding downstream 138069 6624263 ~ 6640847 (-)
LOC110533291 LOC106603975 coding downstream 321248 6429933 ~ 6457668 (-)
LOC110533295 LOC105008281 coding downstream 374580 6403217 ~ 6404336 (-)
znhit3 znhit3 coding downstream 377497 6399723 ~ 6401419 (-)
LOC118966698 rnf43 coding upstream 21481 6809001 ~ 7034472 (-)
LOC118966699 NA coding upstream 215439 7002865 ~ 7006459 (-)
LOC118966700 NA coding upstream 220400 7007920 ~ 7014182 (-)
LOC118966702 NA coding upstream 221920 7009440 ~ 7011035 (-)
hsf5 LOC106603959 coding upstream 248678 7036198 ~ 7041922 (-)
G849412 NA non-coding downstream 47049 6731177 ~ 6731867 (-)
G849369 NA non-coding downstream 66634 6711570 ~ 6712282 (-)
G849406 NA non-coding downstream 77689 6699282 ~ 6701227 (-)
G849375 NA non-coding downstream 88583 6689560 ~ 6690333 (-)
G849404 NA non-coding downstream 94397 6682937 ~ 6684519 (-)
G849444 NA non-coding upstream 23642 6811162 ~ 6811931 (-)
G849452 NA non-coding upstream 39380 6826900 ~ 6869391 (-)
G849422 NA non-coding upstream 41066 6828586 ~ 6833642 (-)
G849455 NA non-coding upstream 42662 6830182 ~ 6834528 (-)
G849378 NA non-coding upstream 53278 6840798 ~ 6869619 (-)
G848524 LOC106591845 other downstream 956888 5739884 ~ 5822028 (-)
LOC118966693 NA other downstream 1054106 5715285 ~ 5724923 (-)
G848149 NA other downstream 1636445 5141877 ~ 5142471 (-)
G847861 NA other downstream 1966734 4810948 ~ 4812182 (-)
G847843 NA other downstream 2037328 4736529 ~ 4741588 (-)
G849536 NA other upstream 227211 7014731 ~ 7015222 (-)
LOC110533297 LOC106603951 other upstream 293071 7080591 ~ 7308250 (-)
G849864 LOC106603950 other upstream 653383 7400883 ~ 7443617 (-)
G850323 NA other upstream 953782 7741302 ~ 7746624 (-)
G850763 NA other upstream 1644011 8431531 ~ 8432041 (-)

Expression


Co-expression Network