XLOC_002773 (stoml3b)


Basic Information

Item Value
gene id XLOC_002773
gene name stoml3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24641229 ~ 24648231 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005134
AACAGTGCCTTCTGCAAAGCTTCCGTAGCAACACAACTACATGGAAATGGAATCTGAAATGGAGCGAGGACCCCAGAGCAAACAGAATCTAATTAGTGAAAATGATGGGAGTCTGGGCTGCTGTGGGTGGATCCTTGTTATTATATCAGCATTTTTCAGCATCCTTGTATTTCCAATCAGCATTTTCATAAGCATAAAGATTGTGAAAGAGTATGAACGTGCTGTCATATTTAGGCTGGGCCGCATAACAGCACGCAAAGCCAAAGGACCAGGAATCTTCTTCATTATCCCCTGCACGGACTCCTTCATCAAAGTGGATCTGAGAACTGTGTCTTTTGACATCCCTCCCCAAGAGATCTTAACCAAAGACTCAGTGACAGTTTCAGTGGATGGTGTTGTGTACTTCAGAGTAAATGACCCTGTTGCCTCAGTGGCAAATGTCTCCAATGCAGATTACTCAACCCGACTACTGGCCCAGACCACCCTGAGAAATGTCCTGGGCACCAAGAACCTTGCTGAGGTCCTTTCTGACAGAGAAGGCATCTCCCATAGTATGCAGACAACTCTAGATGAGGCCACAGATTCATGGGGCATCAAGGTGGAGCGAGTGGAGATTAAAGATGTTAAACTGCCACAGCAGCTGCAGAGAGCAATGGCAGCTGAGGCGGAGGCATCTCGTGAGGCCAGAGCAAAGGTCATTGCAGCGGAGGGAGAAATGAATGCGTCCAGGGCTCTAAAGGAGGCATCTCTGGTGATCGCAGAGTCTCCATCTGCACTTCAGCTCAGATACCTCCAAACCCTCAACACCATTGCAGCCGAGAAGAACTCCACCATCGTCTTCCCACTGCCCATTGACATCATGAACCACTTCATAAGGAAATAAATGCTGAATATTCTTTACATACATATGCTATCCATTTACTTACAACTTGTAATATGTACTTACAAATGtgccatgttttacattttttttatgttgaaggAGACTTTTTACTTGTTTATGAAAGGAAAGAGCGTAATCTTAAGGTTTACAAatggctttatttaaaaaatacattaccaATATTACAATTCAGAAATATACTAATGTGTAACGTAAAAATCCAAATGCAAAATTTCATATCCTCTTGTAAGCATGCATACTATTACATGaaacaaatgataaataaaaataaacacatttttgtacaaaa
>TCONS_00005135
AGTGCCTTCTGCAAAGCTTCCGTAGCAACACAACTACATGGAAATGGAATCTGAAATGGAGCGAGGACCCCAGAGCAAACAGAATCTAATTAGTGAAAATGATGGGAGTCTGGGCTGCTGTGGGTGGATCCTTGTTATTATATCAGCATTTTTCAGCATCCTTGTATTTCCAATCAGCATTTTCATAAGCATAAAGATTGTGAAAGAGTATGAACGTGCTGTCATATTTAGGCTGGGCCGCATAACAGCACGCAAAGCCAAAGGACCAGGAATCTTCTTCATTATCCCCTGCACGGACTCCTTCATCAAAAACCTTGCTGAGGTCCTTTCTGACAGAGAAGGCATCTCCCATAGTATGCAGACAACTCTAGATGAGGCCACAGATTCATGGGGCATCAAGGTGGAGCGAGTGGAGATTAAAGATGTTAAACTGCCACAGCAGCTGCAGAGAGCAATGGCAGCTGAGGCGGAGGCATCTCGTGAGGCCAGAGCAAAGGTCATTGCAGCGGAGGGAGAAATGAATGCGTCCAGGGCTCTAAAGGAGGCATCTCTGGTGATCGCAGAGTCTCCATCTGCACTTCAGCTCAGATACCTCCAAACCCTCAACACCATTGCAGCCGAGAAGAACTCCACCATCGTCTTCCCACTGCCCATTGACATCATGAACCACTTCATAAGGAAATAAATGCTGAATATTCTTTACATACATATGCTATCCATTTACTTACAACTTGTAATA

Function

symbol description
stoml3b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in intestinal bulb. Orthologous to human STOML3 (stomatin like 3).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-366 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in intestinal bulb. Orthologous to human STOML3 (stomatin like 3).

Ensembl:

ensembl_id ENSDARG00000057035

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005134 False 1193 mRNA 0.42 7 24641229 24648231
TCONS_00005135 True 739 mRNA 0.46 7 24641485 24648228

Neighbor

gene id symbol gene type direction distance location
XLOC_002772 NA coding downstream 13791 24613973 ~ 24627438 (-)
XLOC_002771 AL929315.2 coding downstream 185497 24455616 ~ 24455732 (-)
XLOC_002770 AL929315.1 coding downstream 195237 24439620 ~ 24445992 (-)
XLOC_002769 hephl1b coding downstream 224758 24394023 ~ 24416471 (-)
XLOC_002767 slc43a2b coding downstream 249513 24371921 ~ 24391716 (-)
XLOC_002774 proser1 coding upstream 672 24648903 ~ 24659840 (-)
XLOC_002775 si:ch211-287a12.9 coding upstream 34076 24682307 ~ 24689725 (-)
XLOC_002776 smpd1 coding upstream 61736 24709967 ~ 24759616 (-)
XLOC_002777 timm10b coding upstream 113985 24762216 ~ 24765988 (-)
XLOC_002778 si:ch1073-15f19.2 coding upstream 130058 24778289 ~ 24784446 (-)
XLOC_002768 CU467963.2 non-coding downstream 257848 24383266 ~ 24383381 (-)
XLOC_002764 NA non-coding downstream 592024 23780542 ~ 24049205 (-)
XLOC_002779 NA non-coding upstream 185465 24833696 ~ 24852525 (-)
XLOC_002788 NA non-coding upstream 732767 25380998 ~ 25390673 (-)
XLOC_002790 NA non-coding upstream 845942 25494173 ~ 25499474 (-)
XLOC_002792 NA non-coding upstream 1038670 25686901 ~ 25687218 (-)
XLOC_002793 NA non-coding upstream 1042641 25690872 ~ 25691670 (-)

Expression


Co-expression Network