G852156 (LOC106603899)


Basic Information

Item Value
gene id G852156
gene name LOC106603899
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 9706802 ~ 9722544 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU971247
ttccaatttaaaaaaaaaaatgcaaacgTTTATTTGAAACATTGATAATAGCTATGTTATAGAACATACAGTGTGAGAGATTAAAGAATATAGTTTTCATTTAACCAGTAAACAATGCAGGAAATTGAAACAAAATCCATATAATAAAAGCTCAGCAGTTGTGACTCgaccaccccaccaccccactaTTTCCTTACTTGGATAATGTATGCTTCTTCTGATTTATTGCAGAGCTAGCTGCTATTCTAGACCTTTCCATTGCACGTAACAGGGAAATAACAGAGAGCAAACACAAGCATTTACGTAACTACTCACATGGACATGTTCAGCGTCTGTGCTTTCAATACACATTGAGACAAAAACTAGGAATATTATTGTGTATATGGACTTCTTTCTGAGGCCCATACAGTGAACAGTTGACAGAGATGTACCGTACCTACCATCTCAATCCAAGAGTCACTTGTCTTTATATGAAATTACCTTACATGTAAAAGACTATGAACTGCAATTCAAAGGTTGCATAAGTCCTTCCACCCATAATGTGAGTGGCAGTCCTTTAAAACCACTGTGAATCTTGACTATTGCTCCATGTTATTGTTATCACTCCCCCAGCTGTCTGTTAAAAGGACGGGTAGAGACTTGCTAGTGCTCCGCCTGCTGGGTAGATCAGGGGACACTGGCTCTGCTGTCTGTTAAAAGGACGGGTAGAGACTTGCTAGTGCTCCACCTGCTGGGTAGATCAGGGGACACTGGCTCTGCTGTCCTGATCCACGGTTCTTAGCATCAATCAGCAGAAGAGGTGACTGTCTGTAATGAGCAATGATGTGTGCCACCATCGGATAGGTCTCTGAGACCTTCAGACCAGTCCCCAGCAGAAACTCATTCTGTTCACAGCGGATCTGGATGTTGTAAACTTTGTCCTGATAGAGTACCATGAGTGTATAGGGCTGAATGGACGACCGTTGTGAACTGTCAACAAAAGGTTCAATAATTTATTCTGAAAATGACTTACCTTCTTCATGTAGTCTGCCAATTGGTGTGGATTCCAGTCCATTACCACTGACTTGGATGGCACTCGGTCAAAACTCATTgttcccttctcttcttCACAAGTGCAATCTGAGGActccagaaagaaagaaaaaacgtCACTATTTTGTCTCCTTCCTCTTCTGTGAAATCATGTTGGGTGTGTCAATTGTCTGGTAAGTGATGAAAGCTATTCACCAAGAGTTATGTATGATCTGAAGTCCAGACAAGAGCAACAAACATTTAAATGTCAATATCTTAAATGGTAGGCTAGTCAGTTATCTGAGAGCTctgagaaaagaaagaaagaaagaaagcaaaCTTCCTCATGAGTTTCC
>TU971249
ttccaatttaaaaaaaaaaatgcaaacgTTTATTTGAAACATTGATAATAGCTATGTTATAGAACATACAGTGTGAGAGATTAAAGAATATAGTTTTCATTTAACCAGTAAACAATGCAGGAAATTGAAACAAAATCCATATAATAAAAGCTCAGCAGTTGTGACTCgaccaccccaccaccccactaTTTCCTTACTTGGATAATGTATGCTTCTTCTGATTTATTGCAGAGCTAGCTGCTATTCTAGACCTTTCCATTGCACGTAACAGGGAAATAACAGAGAGCAAACACAAGCATTTACGTAGCCTGCAGTGCCTGCAGTTTTGAAGGTAGAGATGCAGTTGAAGCGATATTAGGAGGAaagCCGTCTGAATGTAAGGATTGTCCGGGGAGCACTGCTCTAGGGTGCCCTGGTCTAGGAAATGTGTTGGAGTTGTATGGTTTGGGCATGGGCACATCATCTTGTACCTCATTTCTTGCATCAGACACATATCTGTTGTTGTTCAGCGGGGCTCTGCCGACCGACGAGCTGCTCCTGCTGACACTACTTGACACAGGGAGGGGAGGTTTGGGCATTCTGGGAGGGTCTGGGCCCCTCTCTTCTGCCTGAGGCCTCCATGAATGTGGAGCAGGCATGTTAGTTGTGTTTAACTTCGTTGCTGGTATTGGAGATTCAGCAAGTCTTGTGCGATCCAGTTTGGTGGGCTTTCTTCTGCGGTCAACTGGTGGAGCGGGGGCAACATTTGAGGAAGTAGCAGGCAACTTGCCAGTTATTCTGCCAGGGTGCTGGGGAGATTGCTCTCTTCTGGGTGGGGGAGGTTGCAGTAGACTAGGGTGACTGGCAGAGGGGATTGGAGGACCAGCCCCAGGGCGTTGAGTTGTTGGAGGAGGATGGCTTCTAGCTGTACTGCGGTGCGGTGTACTAtCAATGTATTCTCCGTCAGCCATGGGCTTGGCAGCACGGAGCTGATGGGGAATTTCTTCAGGCGCCTCAGACGGAGGTGACTCATAGCCGTTGTCACTGTCCTCAAGTCCAACATCCTCTGTTGGTGACTCGTAATCTCCCCCACTGCCATCATCTTCCTCAGCATCTGGATTCTCATAGTCTTCGTCACTCCCCTCATCCT

Function

NR:

description
lymphocyte cytosolic protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU971247 False 1367 lncRNA 0.41 4 9706802 9722544
TU971249 True 1129 lncRNA 0.48 12 9708755 9722544

Neighbor

gene id symbol gene type direction distance location
LOC110533396 LOC106603900 coding downstream 2306 9699947 ~ 9704496 (-)
slbp2 LOC106603940 coding downstream 12251 9691209 ~ 9694551 (-)
fam53c LOC106603902 coding downstream 17315 9676744 ~ 9689487 (-)
LOC110533392 LOC106603903 coding downstream 30612 9660229 ~ 9676190 (-)
LOC110533386 LOC106603904 coding downstream 50378 9620938 ~ 9659052 (-)
nhp2 LOC106603897 coding upstream 29899 9752443 ~ 9754417 (-)
grpel2 LOC106603896 coding upstream 52011 9774555 ~ 9785863 (-)
afap1l1b LOC106603893 coding upstream 64084 9786628 ~ 9824009 (-)
LOC110534842 LOC106603895 coding upstream 97000 9819544 ~ 9941581 (-)
LOC110533312 LOC106603939 coding upstream 236133 9958677 ~ 9966932 (-)
G852000 NA non-coding downstream 56312 9649060 ~ 9650490 (-)
G852081 NA non-coding downstream 184222 9522037 ~ 9522580 (-)
G852070 NA non-coding downstream 207968 9498246 ~ 9498834 (-)
G852066 NA non-coding downstream 209048 9491579 ~ 9497754 (-)
G852177 NA non-coding upstream 17255 9739799 ~ 9740888 (-)
G852184 NA non-coding upstream 37090 9759634 ~ 9759950 (-)
G852192 NA non-coding upstream 81760 9804304 ~ 9805010 (-)
G852198 NA non-coding upstream 89821 9812365 ~ 9813152 (-)
G852202 NA non-coding upstream 102846 9825390 ~ 9825809 (-)
G850763 NA other downstream 1274761 8431531 ~ 8432041 (-)
G850323 NA other downstream 1960178 7741302 ~ 7746624 (-)
G849864 LOC106603950 other downstream 2263185 7400883 ~ 7443617 (-)
LOC110533297 LOC106603951 other downstream 2574237 7080591 ~ 7308250 (-)
G849536 NA other downstream 2691580 7014731 ~ 7015222 (-)
G852802 NA other upstream 739712 10462256 ~ 10462650 (-)
G853244 NA other upstream 1282565 11005109 ~ 11005658 (-)
G853740 NA other upstream 1719708 11442252 ~ 11442590 (-)
LOC110533345 LOC106603865 other upstream 1859142 11567493 ~ 11583280 (-)
G854016 LOC106603864 other upstream 1892712 11615256 ~ 11620922 (-)

Expression


Co-expression Network