Gene
RNA
| Item | Value |
|---|---|
| gene id | G852821 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048574.1 |
| NCBI id | CM023228.2 |
| chromosome length | 87811138 |
| location | 10498716 ~ 10499267 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: transcription factor COE1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU972000 | True | 269 | lncRNA | 0.63 | 2 | 10498716 | 10499267 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110533324 | LOC106603889 | coding | downstream | 343474 | 10146911 ~ 10155242 (-) |
| LOC110533312 | LOC106603939 | coding | downstream | 531784 | 9958677 ~ 9966932 (-) |
| LOC110534842 | LOC106603895 | coding | downstream | 557135 | 9819544 ~ 9941581 (-) |
| afap1l1b | LOC106603893 | coding | downstream | 674707 | 9786628 ~ 9824009 (-) |
| grpel2 | LOC106603896 | coding | downstream | 712853 | 9774555 ~ 9785863 (-) |
| LOC118936914 | NA | coding | upstream | 48304 | 10547571 ~ 10549301 (-) |
| LOC118966706 | NA | coding | upstream | 208275 | 10707542 ~ 10709076 (-) |
| LOC110533330 | LOC106603879 | coding | upstream | 261415 | 10760682 ~ 10849833 (-) |
| LOC110533336 | LOC106603872 | coding | upstream | 489522 | 10988789 ~ 10993793 (-) |
| bod1 | LOC106603873 | coding | upstream | 526820 | 11026087 ~ 11029511 (-) |
| G852820 | NA | non-coding | downstream | 3199 | 10495191 ~ 10495517 (-) |
| G852816 | NA | non-coding | downstream | 8403 | 10489591 ~ 10490313 (-) |
| G852807 | NA | non-coding | downstream | 24117 | 10474259 ~ 10474599 (-) |
| G852805 | NA | non-coding | downstream | 27122 | 10471195 ~ 10471594 (-) |
| G852804 | NA | non-coding | downstream | 32162 | 10466164 ~ 10466554 (-) |
| G852823 | LOC100194703 | non-coding | upstream | 1868 | 10501135 ~ 10501814 (-) |
| G852828 | NA | non-coding | upstream | 6477 | 10505744 ~ 10508227 (-) |
| G852829 | NA | non-coding | upstream | 10203 | 10509470 ~ 10509995 (-) |
| G852848 | NA | non-coding | upstream | 68648 | 10567915 ~ 10568441 (-) |
| G852857 | NA | non-coding | upstream | 83952 | 10583219 ~ 10583635 (-) |
| G852802 | NA | other | downstream | 36066 | 10462256 ~ 10462650 (-) |
| G850763 | NA | other | downstream | 2066675 | 8431531 ~ 8432041 (-) |
| G850323 | NA | other | downstream | 2752092 | 7741302 ~ 7746624 (-) |
| G849864 | LOC106603950 | other | downstream | 3055099 | 7400883 ~ 7443617 (-) |
| LOC110533297 | LOC106603951 | other | downstream | 3366151 | 7080591 ~ 7308250 (-) |
| G853244 | NA | other | upstream | 505842 | 11005109 ~ 11005658 (-) |
| G853740 | NA | other | upstream | 942985 | 11442252 ~ 11442590 (-) |
| LOC110533345 | LOC106603865 | other | upstream | 1082419 | 11567493 ~ 11583280 (-) |
| G854016 | LOC106603864 | other | upstream | 1115989 | 11615256 ~ 11620922 (-) |
| G854402 | NA | other | upstream | 1285853 | 11785120 ~ 11785853 (-) |
