G852823 (LOC100194703)


Basic Information

Item Value
gene id G852823
gene name LOC100194703
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 10501135 ~ 10501814 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU972002
TTtactgacaattacatgaagttgatgcaaagagtcaatatttgcagtgttgacccttctttttcaagacctctgcaatccaccctggcatgctgtcaattaacttctgggccacatcctgactgatggcagcccattcttgcataatcaatgcttggagtttgtcagaatttgtggggttttgtttgtccacctgcctcttgaggattgaccacaagttttcaatgggattaagatgtggggagtttcctggccatggacccaaaatatctatgttgtgttccccgagccacttagttatcacttttgccttatggcaaggtgctccatcatgctggaaaaggcattgttcgtcaccaaactgttcctggatggttgggagaagttgctctcggaggatgtgttgataccattctttattcatggctttgttcttaggcaaaattgtgagtgagcccactcccttggctgagaagcaaccccacacatgaatggtatcaggatgctttactgttggcattatacaggactgatggtagcgctcaccttgtcttctccagacaagcttttttccggatgccccaaacaatcggaaaggggattcatcagagaaaatgactttaccccagtcctcagcagtccaatccctgtaccttttgcagaatatcagtctgtccctg

Function

NR:

description
transposase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU972002 True 680 lncRNA 0.45 1 10501135 10501814

Neighbor

gene id symbol gene type direction distance location
LOC110533324 LOC106603889 coding downstream 345893 10146911 ~ 10155242 (-)
LOC110533312 LOC106603939 coding downstream 534203 9958677 ~ 9966932 (-)
LOC110534842 LOC106603895 coding downstream 559554 9819544 ~ 9941581 (-)
afap1l1b LOC106603893 coding downstream 677126 9786628 ~ 9824009 (-)
grpel2 LOC106603896 coding downstream 715272 9774555 ~ 9785863 (-)
LOC118936914 NA coding upstream 45757 10547571 ~ 10549301 (-)
LOC118966706 NA coding upstream 205728 10707542 ~ 10709076 (-)
LOC110533330 LOC106603879 coding upstream 258868 10760682 ~ 10849833 (-)
LOC110533336 LOC106603872 coding upstream 486975 10988789 ~ 10993793 (-)
bod1 LOC106603873 coding upstream 524273 11026087 ~ 11029511 (-)
G852821 NA non-coding downstream 1868 10498716 ~ 10499267 (-)
G852820 NA non-coding downstream 5618 10495191 ~ 10495517 (-)
G852816 NA non-coding downstream 10822 10489591 ~ 10490313 (-)
G852807 NA non-coding downstream 26536 10474259 ~ 10474599 (-)
G852805 NA non-coding downstream 29541 10471195 ~ 10471594 (-)
G852828 NA non-coding upstream 3930 10505744 ~ 10508227 (-)
G852829 NA non-coding upstream 7656 10509470 ~ 10509995 (-)
G852848 NA non-coding upstream 66101 10567915 ~ 10568441 (-)
G852857 NA non-coding upstream 81405 10583219 ~ 10583635 (-)
G852888 NA non-coding upstream 111102 10612916 ~ 10613419 (-)
G852802 NA other downstream 38485 10462256 ~ 10462650 (-)
G850763 NA other downstream 2069094 8431531 ~ 8432041 (-)
G850323 NA other downstream 2754511 7741302 ~ 7746624 (-)
G849864 LOC106603950 other downstream 3057518 7400883 ~ 7443617 (-)
LOC110533297 LOC106603951 other downstream 3368570 7080591 ~ 7308250 (-)
G853244 NA other upstream 503295 11005109 ~ 11005658 (-)
G853740 NA other upstream 940438 11442252 ~ 11442590 (-)
LOC110533345 LOC106603865 other upstream 1079872 11567493 ~ 11583280 (-)
G854016 LOC106603864 other upstream 1113442 11615256 ~ 11620922 (-)
G854402 NA other upstream 1283306 11785120 ~ 11785853 (-)

Expression


Co-expression Network