G852828


Basic Information

Item Value
gene id G852828
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 10505744 ~ 10508227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU972009
tctgttaTTTTTGGCTCCCCCTATCTCTGCTGTGCCATGCCGAGTGCTCCCTGCGGCAGGGGAAACAGTTAAACATCGCTCAGGGATAAGGATAAGGAACAGTTCCACTTGTGTTCCCCCCTCTCTATATGTTGCTTGTTGCACCCATTTTAAAGTATGTTAGCAGAGCACTGATGTGGTCTCTACTTTACACTGATGTCTGTGGGTTTGCATTGTTAAGGCATCTAAACTGCTGGTTCAGATTTTGGTGAGACAACGGAGGGGAAAGTGAAAATAAGATGGAAGAGATGAAGAAAGTATTTTCATATtgtttccccccaaaaaatggtcTTCCTGCTTTCAGCACAGAAATTCATGGCTAGAAAGAGAACCCACATTCCTAATGTTTGTTTTTAAACAGTATACGGGTTTTTTTTTAAGCCCAAAAAAATCTAAGCAAAGAAGAAATTCAAATGATATACTTATATAATCTCTTTACTATAAGAATAATATACTACCTTTACCATATGATAAAACAAACGCAAAATCCAGACAACATCTTTTGTTTCTTCATTAAATTTCCAAAATGATACAAAAAAATAGACAATGGCTTTTAGGGTGGATGGAAAATGGAAGTATGGCTTAAAACAACACAAGAAAAACAACAACGTAAAAAATGACATGTATAAAAACAACATCTAAACACGGAACATGGTTGACAACCAAATTAAAAAACTGATCGGCACTGTCACAAAATGCAAACATACACACGAAAGGATGTGGAAGAAGCAAAATGTAGAAATTGAGGAGAGATGGTACATTATTAGGTAACATTCGGTAACATTCTGTATCTCCCCTCTTAACTATTTAAACTCTCTGAGCTAAAGTTGATGGGATCATTTTGAGTTTGTAGTAAACATGACATCCGTGACACTCAAGCTGCCGTAAGACCTCTTTAAATGTATAAATATATCTTAAACAATGACTTTGGCAAAATTAAAAGAAACATCACATACATGGATTACtatatacaaaaacacacatcacacgagaagaaaaaaaaaagaaagacaatTGATAAGATTGGATTCAGATATTTTTTTGCTGGGCATCTGAGGATTAGGTCACTTTTACAGTGCTGGGTAATCCACGTATCACCACGTCGACTGGGACACCACTGAACACCTCATGTCGACTCATTAGTCTGTCTATAAAGTGTCTCCCAGTTTGACCTATCTCAGATCCTCAACTGTTGTACGGTAACAAGGTGGAACAAGAGAACCGTTTTGAATGGGCGACCCCATGACCCCAGTGACCCCAGTATCATGGTGAGAACAACAACAAACCAAAAACTATCAAGGAATCATTCATACAAAGAAAAATAACTCACACAATATAGCAAAAGTGAAATGGCGACATCCTTTTAAAACATATGGTGTCCTTCATTGAGATTTCATGgtggatggcagagagagagagagagagaacactttaACAAGAGGGTTTCTAATGTACAGTTACAGGGCACAGCAAGCTTGCGGTCCAATAGACCAACCACACAGTAGAGACACTGTTGGTATCCAGAGCAGGTTCAGGCTCTGCTCTCTAACTCTGACAACCACCTAGGAGCTTGGACACGACCGGTACACTTACAGCCAACATGGAATGAATGGCTGGCTACGTGTCATCATGGGTAAATCACTTGCTTTCTGTGGTGCCGAGCGAGCGCTTCTAGTCGTAGCGATGGAGTTCTCTGCTAggcatgagagggagagaaatgagtaGGCGCTGTTTGCAGCGGCCAAAAGAACTCGAAAGCAGAGAGTTTCTGCAATGGTGCATGGTTAGTGCTACCTAGCGTGTCTTTCTGTGCCTTAGGGTTAGTTAGGGAATGTGGCATCGTCTCTATCCAGCACACTGTAGTACAAAACAAATGTCTAAATGTCTGGTTTGGCTAGTCTTGATTCATGAGTACAGCAATTGTATAAATCTAATTCAGTCTTTACTATTTAACTCACATTTTAATGTCTTCTATCATTCTCAAACAATTTATTAATTTATCTTTTTCAGAttcataaataaaaaaatctctcTAATATTTTCACTTGTGTATATTACACATTGAAGATGGGAAAATACATAGTGTTTTGCACAAAGGTAAAACACTAAATAAAAGGATAAGTCAATCCTCTCCCTTAATAAATAAAACTCATGTTTAGCTGGGTTGGGTTTTCTGGGTAATCTGTGACCTTGTGTTCAACTTGTTGTAAATGCTGCGTTTTcttcttatttattttttctccttTTAAAGTTCAAATGTGATTCCTTTTAAAAAAAAGGGCCTGAGTTACGGGTTCTATTCCTTCAACGCAGGACTGACGAACCAGTCCTAAACTGGAGCCTTGGGTACATGCTGAGATCCACGCCTGAGTCTTTCTTCTCATACCCAAACATCGCTTACATGGGAGGAACGATCATTCCAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU972009 True 2464 lncRNA 0.39 2 10505744 10508227

Neighbor

gene id symbol gene type direction distance location
LOC110533324 LOC106603889 coding downstream 350502 10146911 ~ 10155242 (-)
LOC110533312 LOC106603939 coding downstream 538812 9958677 ~ 9966932 (-)
LOC110534842 LOC106603895 coding downstream 564163 9819544 ~ 9941581 (-)
afap1l1b LOC106603893 coding downstream 681735 9786628 ~ 9824009 (-)
grpel2 LOC106603896 coding downstream 719881 9774555 ~ 9785863 (-)
LOC118936914 NA coding upstream 39344 10547571 ~ 10549301 (-)
LOC118966706 NA coding upstream 199315 10707542 ~ 10709076 (-)
LOC110533330 LOC106603879 coding upstream 252455 10760682 ~ 10849833 (-)
LOC110533336 LOC106603872 coding upstream 480562 10988789 ~ 10993793 (-)
bod1 LOC106603873 coding upstream 517860 11026087 ~ 11029511 (-)
G852823 LOC100194703 non-coding downstream 3930 10501135 ~ 10501814 (-)
G852821 NA non-coding downstream 6477 10498716 ~ 10499267 (-)
G852820 NA non-coding downstream 10227 10495191 ~ 10495517 (-)
G852816 NA non-coding downstream 15431 10489591 ~ 10490313 (-)
G852807 NA non-coding downstream 31145 10474259 ~ 10474599 (-)
G852829 NA non-coding upstream 1243 10509470 ~ 10509995 (-)
G852848 NA non-coding upstream 59688 10567915 ~ 10568441 (-)
G852857 NA non-coding upstream 74992 10583219 ~ 10583635 (-)
G852888 NA non-coding upstream 104689 10612916 ~ 10613419 (-)
G852890 NA non-coding upstream 105645 10613872 ~ 10614130 (-)
G852802 NA other downstream 43094 10462256 ~ 10462650 (-)
G850763 NA other downstream 2073703 8431531 ~ 8432041 (-)
G850323 NA other downstream 2759120 7741302 ~ 7746624 (-)
G849864 LOC106603950 other downstream 3062127 7400883 ~ 7443617 (-)
LOC110533297 LOC106603951 other downstream 3373179 7080591 ~ 7308250 (-)
G853244 NA other upstream 496882 11005109 ~ 11005658 (-)
G853740 NA other upstream 934025 11442252 ~ 11442590 (-)
LOC110533345 LOC106603865 other upstream 1073459 11567493 ~ 11583280 (-)
G854016 LOC106603864 other upstream 1107029 11615256 ~ 11620922 (-)
G854402 NA other upstream 1276893 11785120 ~ 11785853 (-)

Expression


Co-expression Network