G853968


Basic Information

Item Value
gene id G853968
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 11531192 ~ 11532228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU973307
CACAGCTcatggtatatgtccgttatgtttatgagggtcaattaaggaagacatcctgttctgcaaaccactggaaaccaggacaacaggagaggatatttttaaagtactggacagctttgtgacataaaatggactttggtggtcaagatatgttggtatctgtactgatgtttCAATATCCataacagggagacatagtggagtgggaacgcacgtgcaagcagttgctcccaacgccacttgggtagactgcagcatccaccgagaggctcttgggtacactgcagcatccaccgagaggctcttgatGCCAAGGGAATGcttgacagcttgaaagacgttttggacactacagtgaaaatggttaactttgttaaaagcaaggcccctgaactctcgtgtattttctgcactatgcaatgatatggacagtgaccatgtaacacttttacaacatacagaagggtgctggttatcaaggagcaaagtattgacacatttttttaaaattgagagacgagcttaaagttttctttactgaccataatttttaACCTGCctgaccacgttttttctcgcctgaatgatctgaatctaggattacagggactctccacaactatattcaatgtgcgggacaacaTTGAGTCTATGATTAAGAAGTTTGAgcttttctctgtctgcattaacaaggacaacacacaggtctttccatcattgtatgatttgtgtgtgcaaatgaactcaagcttacggacaacgtcaaatgtgatatagtgaagcacctgagtgagttggtgtgcaattacgcaggtactttcctgaaacggatgacacaaacaactggattcgttatccctttcatgccctgcctccagtccacttatcaatttctgaacaagagagcctcatcgaaattgcagcaagcggttctgtgaaaattgaatttaatcagaagccactgccagatttctgaattgggctgcact

Function

NR:

description
PREDICTED: zinc finger BED domain-containing protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU973307 True 992 lncRNA 0.43 2 11531192 11532228
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110533343 LOC106603867 coding downstream 56491 11467381 ~ 11474701 (-)
LOC118936915 NA coding downstream 439918 11090021 ~ 11091274 (-)
bod1 LOC106603873 coding downstream 501681 11026087 ~ 11029511 (-)
LOC110533336 LOC106603872 coding downstream 537399 10988789 ~ 10993793 (-)
LOC110533330 LOC106603879 coding downstream 681359 10760682 ~ 10849833 (-)
LOC110533344 LOC106603866 coding upstream 29708 11561936 ~ 11564213 (-)
LOC110533345 LOC106603865 coding upstream 35265 11567493 ~ 11583280 (-)
kctd16b LOC106603861 coding upstream 254967 11787195 ~ 11868573 (-)
LOC110534849 LOC106567493 coding upstream 562106 12094334 ~ 12239835 (-)
trnaa-ugc-40 NA coding upstream 665997 12198225 ~ 12198294 (-)
G853967 NA non-coding downstream 138 11528866 ~ 11531054 (-)
G853828 NA non-coding downstream 10543 11520450 ~ 11520649 (-)
G853824 NA non-coding downstream 11968 11518933 ~ 11519224 (-)
G853793 NA non-coding downstream 31591 11499237 ~ 11499601 (-)
G853718 NA non-coding downstream 102486 11428381 ~ 11428706 (-)
G853972 NA non-coding upstream 8969 11541197 ~ 11561248 (-)
G854017 NA non-coding upstream 85877 11618105 ~ 11619105 (-)
G854102 NA non-coding upstream 199839 11732067 ~ 11732317 (-)
G854116 NA non-coding upstream 207287 11739515 ~ 11739763 (-)
G854125 NA non-coding upstream 211886 11744114 ~ 11749161 (-)
G853740 NA other downstream 88602 11442252 ~ 11442590 (-)
G853244 NA other downstream 525534 11005109 ~ 11005658 (-)
G852802 NA other downstream 1068542 10462256 ~ 10462650 (-)
G850763 NA other downstream 3099151 8431531 ~ 8432041 (-)
G850323 NA other downstream 3784568 7741302 ~ 7746624 (-)
G854016 LOC106603864 other upstream 83028 11615256 ~ 11620922 (-)
G854402 NA other upstream 252892 11785120 ~ 11785853 (-)
G854734 golga7b other upstream 761875 12294103 ~ 12294536 (-)
G855079 sept8 other upstream 1049165 12581393 ~ 12611178 (-)

Expression

G853968 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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G853968 Expression in each Bioproject

Bar chart with 20 bars.
G853968 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network