G854017


Basic Information

Item Value
gene id G854017
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 11618105 ~ 11619105 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU973364
GATGTTCCACATCCTACACAGGCTCAAATACCAAGCCTAAGTCCCCATCCCCAAATACATTCTTAACTTAATTCTTAACTTAAATAACTTTATTTTACATATGCCGACTCATCTTAAACAGGGATGTCCTCAGAAACCCTAGAATGATCACTAGGGCTCTCATAAGACACCAAACGGGAACCTGTAGTATGATGACCCCCATAGAGACCTGTAATAATCACCATTTAGACGGATGTGACAGTAATCTGTAATAGTAATCATCTATCCATCTGTGACATAGTAATCATCCATCCATCTGTGACATAGTAATCATCCACCTGTGACATAGTAATCATCCACCTGTGACATAGTAATCATCCATCCATCTGTGACATAGTAATCATCCACCTGTGACATAGTAATCATCCATCCATCTGTGACATAGTAATTATCCATCTGTGACATAGTAATCATCCATCCATCTGTGACATAGTAATCATCCATCCATCTGTGACATAGTAATCATCCATCTGTGACATAGTAATTATCCATCTGTGACATAGTAATCATCCATCCATCTGTGACATAGTAATCATCCATCCATCTGTGACATAGTAATCATCCATCCATCTGTGACATAGTAATCATCCACCTGTGACATAGTAATCATCCATCTGTGACATAGTAATCATCCATCCATCTGTGACATAGTAATCATCCATCCATCTGTGACATAGTAATCATCCATCTGTGACATAGTCATATGCAGACATCATTGATGCACCAATGAAATGACATGAGCCTCTGAAGGTTCTATACACAAGCCAAGTTTGCTATAGGTACCAAGGTTAGATCATGAATATTGTAATATGAATAAAATGTGGTCCTGACCTGGATGAATGAATCTAACACACAGACAGCCATGTTGTCAGGAACACTCTAGTGCAGTGGATACTTTGTAGGTTTggct
>TU973365
GATGTTCCACATCCTACACAGGCTCAAATACCAAGCCTAAGTCCCCATCCCCAAATACATTCTTAACTTAATTCTTAACTTAAATAACTTTATTTTACATATGCCGACTCATCTTAAACAGGGATGTCCTCAGAAACCCTAGAATGATCACTAGGGCTCTCATAAGACACCAAACGGGAACCTGTAGTATGATGACCCCCATAGAGACCTGTAATAATCACCATTTAGACGGATGTGACAGTAATCTGTAATAGTAATCATCTATCCATCTGTGACATAGTAATCATCCATCCATCTGTGACATAGTAATCATCCACCTGTGACATAGTAATCATCCATCTGTGACATAGTAATCATCCATCCATCTGTGACATAGTAATCATCCATCCATCTGTGACATAGTAATCATCCACCTGTGACATAGTAATCATCCATCTGTGACATAGTAATCATCCATCCATCTGTGACATAGTAATCATCCATCCATCTGTGACATAGTAATCATCCATCTGTGACATAGTCATATGCAGACATCATTGATGCACCAATGAAATGACATGAGCCTCTGAAGGTTCTATACACAAGCCAAGTTTGCTATAGGTACCAAGGTTAGATCATGAATATTGTAATATGAATAAAATGTGGTCCTGACCTGGATGAATGAATCTAACACACAGACAGCCATGTTGTCAGGAACACTCTAGTGCAGTGGATACTTTGTAGGTTTggct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU973364 False 949 lncRNA 0.39 2 11618105 11619105
TU973365 True 731 lncRNA 0.39 2 11618105 11619105

Neighbor

gene id symbol gene type direction distance location
LOC110533345 LOC106603865 coding downstream 34825 11567493 ~ 11583280 (-)
LOC110533344 LOC106603866 coding downstream 53892 11561936 ~ 11564213 (-)
LOC110533343 LOC106603867 coding downstream 143404 11467381 ~ 11474701 (-)
LOC118936915 NA coding downstream 526831 11090021 ~ 11091274 (-)
bod1 LOC106603873 coding downstream 588594 11026087 ~ 11029511 (-)
kctd16b LOC106603861 coding upstream 168090 11787195 ~ 11868573 (-)
LOC110534849 LOC106567493 coding upstream 475229 12094334 ~ 12239835 (-)
trnaa-ugc-40 NA coding upstream 579120 12198225 ~ 12198294 (-)
LOC118966708 NA coding upstream 648615 12267720 ~ 12270434 (-)
nfip1 nfip1 coding upstream 786729 12405834 ~ 12431079 (-)
G853972 NA non-coding downstream 56857 11541197 ~ 11561248 (-)
G853968 NA non-coding downstream 85877 11531192 ~ 11532228 (-)
G853967 NA non-coding downstream 87051 11528866 ~ 11531054 (-)
G853828 NA non-coding downstream 97456 11520450 ~ 11520649 (-)
G853824 NA non-coding downstream 98881 11518933 ~ 11519224 (-)
G854102 NA non-coding upstream 112962 11732067 ~ 11732317 (-)
G854116 NA non-coding upstream 120410 11739515 ~ 11739763 (-)
G854125 NA non-coding upstream 125009 11744114 ~ 11749161 (-)
G854154 NA non-coding upstream 151245 11770350 ~ 11770565 (-)
G854155 NA non-coding upstream 151832 11770937 ~ 11771300 (-)
G853740 NA other downstream 175515 11442252 ~ 11442590 (-)
G853244 NA other downstream 612447 11005109 ~ 11005658 (-)
G852802 NA other downstream 1155455 10462256 ~ 10462650 (-)
G850763 NA other downstream 3186064 8431531 ~ 8432041 (-)
G854402 NA other upstream 166015 11785120 ~ 11785853 (-)
G854734 golga7b other upstream 674998 12294103 ~ 12294536 (-)
G855079 sept8 other upstream 962288 12581393 ~ 12611178 (-)
G856922 NA other upstream 2565182 14184287 ~ 14184974 (-)
G856863 LOC106603829 other upstream 2584428 14203533 ~ 14210382 (-)

Expression


Co-expression Network