XLOC_027759 (znf1040)


Basic Information

Item Value
gene id XLOC_027759
gene name znf1040
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 47656992 ~ 47672667 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00054328
ATTGGCTTATTTAGCTATAAGAGAACAACTTTGGAGGACAAACTACGATTGTTGATTCCTACATTGAgattattaccaacaacaacatacaaagaaaaaccTACTGAGGCCATTTCTCATCCCACTTCTTCATTGAAGACTGGAAAGgataaagtgtccaaactcagagaaaaactcctgctgaagtgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagatctgatggtgctgaaagaagagactcatggACAGAATGAAATAGATGAGAAACAGCAGTTTGAGAAACCCCAAGAAATaatgactgatgaaaaacccacactgactaaaaagacttcatcacacggaagacctcggaaatccaaatctgggtgtaatttcagctgtaaacagtgtagtaagagtttcagtcagaagtcaaagcttgatgttcacatgagagttcacactagggagcaacctttcacctgcgaacagtgtggaaagagttttggtcaaaaacaaggctttaaagcccacatgagaattcacactggaaagaggaagttcacatgccaacagtgtggaaaaagcttttatcatgctggaaactttgcagcacacatgagaattcacactggggagaagcctttcagctgtaagcagtgtggaaagagtttctgtcataagccaaaccttgatgttcacatgagagttcacacaggggagaaaccttacacctgcgaacagtgtggaaggagttttggtcaaaaacaaagctttaatactcacatgagaattcacactggaaagAGGCCGtgcacatgccaacagtgtgaaaAAAGCTTCTATAATGCAAGAAGCCTTGCAGCACACATGataactcacactggagagaggcctttTAGCTGTATActttgtggaaagagtttcagtctaAAGCTGACCCTGATtgctcacatgagagttcacactagggagaaacctcacatctgcgaacagtgtggaaagagttttggtcaaaaacaagaccttgacatccacatgaggattcacactggagagaaaccttacacatgcacagagtgtggtaaaagttttccACATATAagctcactcaaacaccacattagaactcacaccggagagaagccgtttacatgtgctcagtgtggaaagagcttcacaaccaaaactagcctcaagaaccacatgaatggtcacactggaaccatagtgttcacatgtgatcagtgtggaaagagtctcacacggAAAGACTCCATTACGAAACATATGAAGATTCACTCAAGAGAGGatcgttttagatgcagtgaatgtggaaagggctttaaaagtaaaagaagcctcaacactcacatgaagcttcacaatggagagcagaaTCCTCAACattgaggccttgtccacacaaacacgggtatattcaaaacggcagcttgTTGATGTAGTTTGTCTGTTCATTCAAGTGaagattatttataaactactttcgagaggatcacatgcttatgattgtcaacggctggtcctgcattagctaaaacatgattcaccaatcagatgattcctgactCACTATAGATAACCAGAAcacaaagctgcggtcacactagactttGAGATTGTGAAATTCTGCCATACGGCGCTGTGGAAAGGGGCGGGATCAAACAagatttttagaaattaaaaaagtgagcaattgctccatggtttaaatttctgtccagagaggtcatgttttgatcctcgattggtctcacgcagtcaagtgatgtgatttcgcaggtcagagttcaccaagcatgAACTTTGCACCTCAGCAACCggtgaaacttgacgcatgaccctgtttCTAGTCTGACGCATTcttgtgcgtatgaatggaagtctatgggaggaaaagcccagtgtgaccgtagcttaacTCAGTTATCCTTGTCTTGCAGAATCCCTCTCCCACCCTTACTCCCCCCCCTTTCTAGATTGGGCAACACAGCAGCCAATGATTagccagtggttagcaatgttgcctcacagtaagaatgtcGCAGGTTAAAGTCGCTGCTAACCAGTTGactttttgtgcagagtttgctcattctccctgtgctcgcgtggatTTCCCCTgattttctcccacagtccaaaaacacacaacctaagtaaactgaacattaaattggcaccatagtcgagctcttagtaagccttatatctccctttagccgatctacctgagctcacactcccctctcgtcctgctaatgggagggagcccagggcttgaggatcttataagcttaggtctctcccgggacagcatgccaaacaagtgtgaactcttgaatgcatatcaagttactgataatgaaaccctttgaacaccTGAAAATTTAAACTCAACTGAAGAGGGATGAAGATTTTGCCAGCTGTTTTgtagtgtagatcaggggtcacagcCCAGTACCAGGTTGTGAGAGTTGCTATCGGGCTGCAAGAAggcaaaataactctatatgttgATATATTGTATTGGCTTGTTTCATATGCAACAAGTATCTACTTCTGATAAGGTGTGAACCAAATAACCTACAGGAACTCAAGAGATGTGACCCATCCAAAGCAGTTGGGTAATCTCCAGGGGGGTTTCATCAGTGTCTCACAGACTGTACTTTGGTTTAAGTTACTTAAAGATGGACAAGTTAACATCA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141210-11 No description available

Ensembl:

ensembl_id ENSDARG00000098986

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00054328 True 2791 mRNA 0.43 3 47656992 47672667
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_027758 BX324142.1 coding upstream 11184 47636303 ~ 47645808 (+)
XLOC_027757 NA coding upstream 154432 47501376 ~ 47502560 (+)
XLOC_027756 si:dkey-124l13.1 coding upstream 200165 47436126 ~ 47456827 (+)
XLOC_027755 znf1122 coding upstream 264168 47385355 ~ 47392824 (+)
XLOC_027754 NA coding upstream 331848 47322865 ~ 47325144 (+)
XLOC_027760 si:ch211-196f19.1 coding downstream 63402 47736069 ~ 47764985 (+)
XLOC_027761 BX324142.2 coding downstream 95430 47768097 ~ 47769270 (+)
XLOC_027762 si:ch211-196h24.2 coding downstream 109744 47782411 ~ 47802916 (+)
XLOC_027763 NA coding downstream 484746 48157413 ~ 48158629 (+)
XLOC_027764 BX321887.15 coding downstream 512130 48184797 ~ 48184945 (+)
XLOC_027752 BX942815.1 non-coding upstream 457437 47199396 ~ 47199555 (+)
XLOC_027748 NA non-coding upstream 682748 46972851 ~ 46974244 (+)
XLOC_027746 NA non-coding upstream 826694 46793741 ~ 46830298 (+)
XLOC_027765 BX321887.2 non-coding downstream 513425 48186092 ~ 48186254 (+)
XLOC_027766 NA non-coding downstream 804513 48477180 ~ 48630115 (+)
XLOC_027768 NA non-coding downstream 1056787 48729454 ~ 48732851 (+)

Expression

Expression of XLOC_027759(znf1040) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Expression of XLOC_027759(znf1040) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network