XLOC_002776 (smpd1)


Basic Information

Item Value
gene id XLOC_002776
gene name smpd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24709967 ~ 24759616 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005142
ATGTCACGTGATCAATCAGCTGACGCTATATGTAAACTCGTCCGGTCGCCCGGGACGCGGTACAGCGTGAGGACAGACTCTTCATTATTCGCAACTGCCAATAAACAAAACGCGAAGTCACCTTGTTCTCATTGctgttttatttacacacacagttCACGCGTGACTCCTTATCCACAGGCTCTGTTTTCCTGTGCGGGTCGACGGGGATGTAGAGACGGGGGTCTGAAAGTACCTAAGCGCGCCGTCGAGATGAAGCGTCCGGTGTACGAGTTGACAGTTTTCTTACTCTGGACCTTGTTTTTTGGGCCTTTGTGTTTCTCCTACCCTCTTGAAGGAGGAACAGATGTGCCTCAGCTGAGGGTCGTGGAGGAGCTGGACCGGTTGAAGCTCGGTTTCGGATGGAGAAACTTGTCCTGCGTGCTGTGTAAAGCGATCTTCGCCTCTGTCGACATCGCGCTGCTGAGTGACTCAAACATGGAGCGAGTGTCTCGAGCTTTAGGAGAGGTGTGTGTCCGTCTTCACCTGGCCAATCCGGATGTGTGTCGTGACATCACCGCACTCTTCCGTGCTGATGTCATCCGAGCCCTCCAGGAGTCTTTTCTCTGGCCTACAGAGGCCTGTGCTGTCTTGGTTGGACCTTCGTGTGGCCATTTCGACATTTACGCCCCCTGGAACGTTTCCTTACCACAAATCCCCAAACCGCCAGTCAAGCCGCCTTCTCCACCCAAACCAGGCTCTCCACGCAGCAGGATCCTGTTCCTCACAGACATCCATTGGGACGCAGAGTACACTGAGGGCAGCCTTGCGGAGTGTAACAAGCCTCTGTGTTGCCGAAATGACTCTGGAAGAGCCAGTTGGAGGCACGCTGGGGCAGGATATTGGGGGACGTATAGCAAGTGTGACCTGCCTTTGCGCACGGTGGAGAATCTCCTGGAGAATGTGGCTAAATCAGGCCCGTGGGATTGGGTTTATTGGACAGGGGATATTCCTGCGCATAATGTGTGGTCTCAAACGCGGAACCAGCAGCTGAATGAGCTGGTCACCATCAGCAGACTCATACACAAACACTTGGGGCGAAATGTTACAGTGTATCCAGCGGTGGGAAATCACGAGAGCACGCCGGTCAATAGTTTTCCTCCTCCGTTTGTGCATGGAAATCATTCGTCCCGTTGGCTTTATGAGACCATGGCGAAGGAGTGGGCACCCTGGCTGCCTGAGGAAGCCCTGGAGACCATACGCCGTGGTGGTTTCTACAGCGTGGAGGTTGAGCCTGGATTGAGGCTTGTGTCTCTGAACATGAACTTTTGCTCCAGAGAAAACTACTGGCTGATGGTGAACTCCACTGACCCAGCAGATCAGCTACAGTGGCTCATACAAATCCTGCAGGAGTCCGAGAACAAGGGAGAGAAGGTCCACATCATTGGTCACATTCCTCCCGGTTTCTGTCTGAGCAGTTGGAGTTGGAATTACTATCATATAGTCAacagGTATGAAAGCACTATAACCGGTCAGTtttttggacacacacacacggatgaGTTTCAGATGTTTTATGATGAAGAAACATTGACCCGTCCACTGAGTGTGGCTTTCATTGCTCCGAGTGTCACTACTTTTGTCAACCTCAACCCAGGATACCGTGTGTATTACGTGGACGGAAACTACCCTGACAGCAGCCGAATGGTTCTAGATCACGAGACGTTTATTCTTAACCTGACTCTGGCCAACAACCGGCCCTTAAAACCAGACCCGAGGCCATCCTGGACACTTCTCTATCGAGCATCCGAAGCCTACGGTCTGTCCACACTCTTCCCTTCAGACATGGAGGCTCTGATCAAACACATGGTGAATGACGATCGCATTTTCCAGCAATTCTGGTACCTCTTTCACAAAGGCCACGTATCCAAACCCTGCAAAGACACATGCAAAACCTCCATCATCTGCTTCCTGCACAGCGGACGCTATGACCTGCTGACTCAATGCAGCCCGCTACATGGAGACACACCCAAGAAGAGCATGTGCTGAGGAGAATGGAGAAATCTAAGCTCATGTTTTACAGTAAGCCTCCATTAGTTAAGGTTAGTAATGTATTTCATTACATGAATTCAGAAGGTACAGCCTCAACGAGCAGTCATTTCaacaactaacattaacaaagatgaataaaaccGCTAAtgaatgtattattcattgttaatgttagtaaattaatAGATTAAAtcaatgtttctcaaccacgctcATGGAGGGCCACCAACACTACATATTTTGTatgtcttctttgtctgtcaaacccatttcaggtctttcagtctctgcttatGATCTGAATCAGGAGTGTTTGGTTAAGgggacatggaaaatgtgcagagctggtggtccttcaggaacgtgcTTGAGAACtaaataatagtaaattaaagggctagttcaccaaAACATAAagcttctgtcatcatttactcactgcactaaccacaaacctgtttgagattctttCACTAGTTGAACACAACATGTATTTGACaaatgttgaaaacctgcaaacatcgacttcatagtatttgtttattatattatggaCGTCAGTGCagtttgaacattcttcaaaatatattcttttgtgttcaacagaaaaaggaaagccTTAatagtttggaaccacttgagagagagtaaatgtgtatttattttgttgaactatccctttaacacgggtgtcaaagccagttcatGGAGGGCCGCCAGTTCATGGaggttccaaccctgcttcaacacacttacctgtaggtttcaaacaagcctgaaggacttgattagtttgatcaggtgtgtttaattagaattggtactaaactgtgcagagctccggccctctaggaactggatttgacacctgtgctttaactAATGGACCTTATTGTACGGTG
>TCONS_00005143
CTTAAGCATGCCTGTTTTTCTCATCAAAGTTACAGCATTTAACCAAGTACACAGTACTTTTGTGGATATAAGGTCAATTCTGTAGTAAAATATGCTTCTGAAATGGCTTAAAAATTAGCTTCAGTCTTAAAAATGAAATGCTAAATAATCCAGACCAAAAGAACCAAAATAGTGCGAACACACCTCTAAACTTCTTGTAATGTTTCACACTTTGTCATTGTTCCCTAGTGACTTGAACTGTGACTGTGTATTTAGTGCAACAGAGATCAGAACGGCTCATCACAGCTTCCTCCTTCTCGTCTCTCTGCAGTGCAGCGCAGACACCAGACACTTGCCCTGAGGCTGTGAAGAGACTGTCCCATCGCACCCTTCCCGTTGCTGGATGTCCTGTCCGCCCTCACCTGTTCTCTTCAGGGTCCAGCTGCATCAAACGCCTCTTCCAGGACACTCCTGGTAGGAGGACGATCCATTGGGATAGTGTGAGAGGAGAGAGGGTGCCGAAATGGATGACATCTTCACTCAGTGCCGTGAAGGCAACGCGGTAGCCGTTCGCCTCTGGCTGGACAACACAGAGAATGACCTAAACCAGGGGGATGATCACGGCTTCAGTCCGTTGCACTGGGCGTGCCGCGAGGGCCGTTCGGGTGTTGTGGATATGCTCATCATGAGAGGTGCTCGTATCAATGTGATGAACCGCGGCGACGACACACCCCTGCACCTGGCAGCGAGCCATGGCCATCGTGACATTCTGGCCAAGCTGATTCAGTGTAAAGCAGATACCAATGCGGCAAACGAGCACGGAAACACCCCTCTACATTATGCCTGCTTCTGGGCCCACGATCAGGTGGCGGAGGATCTGGTCAGTAATGGAGCTCAGGTGAGCATCTGCAACAAGTATGGAGAAACTCCAATGGACAAGGCCAAACCACCGCTTGCAGCAAATCTAAAAGACCTGGCAGAGAAACAAGGACAGAGCCTGTCAAAAGTCCCTTACAAGGACAATTTCTGGAAAGGAACAACTCGAACACGACCACGTAATGGCACACTAAACAAGCAAGCTGGCATAGATTATAAGCAGCTTAACATGCTGAACAAGATCAACGAGAACCACTCCGGCGAGCTGTGGAAGGGCCGCTGGCAGGGCACAGAGATTGTGGTCAAGATGCTGCATGTGCGGGAATGGACCACCAGAAAGAGCCGAGACTTTAATGAGGAGTACCCTAAACTAAGAATCTTCTCTCACCCAAACGTGTTGCCCGTGTTGGGGGCGTGTCAGTCTCCACCTGCCCCTCACCCAATCATCATCACACACTCTATGCCCTACGGTTCCCTCTACAACTTGCTGCATGAGGGCACCAACTTAGTAGTGGATCAAAACCAGGCTGTGAAATTTGCTCTGGACATTGCCTGTGGAATGGCTTTCCTACACACTCTTGAGCCCATGATCCCCCGCCATTATCTCAACAGCAAGAGTGTCATGATTGACGAGGACATGACGGCCAGGATAAGCATGGCAGATGTAAAGTTGTCATTTCAGTGTCCTGGCAGGATGTACTCTCCTGCATGGGTGGCACCTGAagCTCTGCAGAAGAAGCCAGAGGAGATTAACCGGCGCTCAGCTGACATGTGGAGCTACGCCGTGCTGCTCTGGGAGCTGGTGAGCAGAGAAGTGCCGTTTGCTGACCTCTCAAACATGGAGATCGGCATGAAGGTGGCGCTAGAGGGACTACGGCCCACCATCCCACCCGGCATCTCCCCTCACATCTGCAAACTCATGAAGATCTGCATGAACGAAGACCCTGCAAAGAGGCCCAAATTCGACATGATCGTGCCCATTCTGGAGAAGATGCAAGACAAATAACCACACTGCACAACACTGACTTCACAGTATTGCCTTAAAGAGAAAGCTCGCTcaaaaatgaacacaaacacaaTATTACCTAACAGATTTAGGTAAAGAAAGAAGgtcttttgaagaatgttggaagccggcagccattgacttccatagtagggaaaaacaaataccatggaagtaaTTGGCTAcgaatttccaacattcttcaaaatatcttctctaggtaagtaaatgataattgaggttttatttttgagtgaactgtctctttaaatttcACCACTCACCAAAGTGCTCTATGCCACTGTAAGTCCTCTGCTACAGAAAGAAAGAACGCTTTGTGGAAGTGctgttgaacatttttaaaaagccacGTTCTCACTATCCTCTATATTCTTATATGCAATCATTGAAAATGgtgcgcgtgtttgtgtgttcatCAGCCTTTACGTGCTCTCAGGAgcgtttacagagaaacactccTCTCAAAACCTCTTTTCTATAGCCATTAAACAGGAAGTGGCGGCAGTGAATGTACAGTAAATATAATGTCAGCTAACCACTCCAAACATCCGCATCTTTTCGCCATTTCTGTCCACTTTGCTTTTTCAAAGGAGTCCTTTTATTAGTTGATGTGTCCGTTATTAGTATTTAAAGCATCCTGCCATTGCATTTACAGTTGCAGATTGTTCCTGATTGCAAAAGTCagatttatttgcattaaaaaatatataaaacagtgcAATAATGCATAAGCTAATGCCATTTTATGCCTtgtcatgtaaaaaaattaattaataaccaAAATAAGAAGTGCCCAGAATATCATGATTGTATTGTCCCTTTCATAGCAAGGAGATTCATGTTATGAACACCCGTTACATTAGATTAGGTAccgtaaatgcaaaaaaataaaggaGACATTTACACACATCACATTAAATGTGAGAAGTCATGTGCCACATATATCATGGGTCAGTTTTCGCATCCCATAAATTGATTTAGATTCATGCATGATTTCTGTTTTGTAACTAACACGCATCCCGCTCCTCATTGTACATGTCAAGCATGTCATGTGCTGAAACGTCTGAGagatttttatactgtatacatatatatgtgtttttttttgtttcatgggTGGTTCGTTCTGCAGCCCATGAGCACTTTTGCTTTTCTGAACACTACATCTATTTACTTCCTTCTGCTCTCAGTGTTCCTCTTTTCAATTTGCCAGTATGCAATAGGAAACCAAGAGACGAAAACAAGCATACTTGACATGCATAATTGtatctttttgttttaattattattatttcacagtgTTTCTTTTTGCGTTTTGAAAAGAAGACAAACAGACTGATTTTCTAACTTATGCTCCGTTTTCTGACCCTGTGAGGTTTTTAATGAACGTTCATGTGGCTTTTCTTCAGTCTTTATTTTGGAGATTTGGGCTGTTTATATTTTATTCCTGATAACTAAAGTTTACTAAAGGAAaataagaacaaaataaaaatgttttggccATGCTGAGAGTTTCAGTCGGTTCATTTGTTTAGTCATGAGATGGAAAGCAGAATTGTGAAATTCTGTCATGAAAATGGATTTTATTGTATAATGCAGAATATCAGTGTTTTGAAAAATTTTGGATGAATAAATTAAACGTAGGACTGTGAGTTTTTCATAATTTGTCTgaatgtaaaaaatttaaatgtttactgTTGTACTGTAATCATttctatataatttattataattaagttTTTCCATGTTTTAGTATAATAGGGATAAAATtatttgataatgtttttttttaagttcccaaaagtgtaaaaaaagaataatgtGTAAAATGGATAACTGCAATCTAGaaaaataaatgggaaatttgactaaattaaataataactgaatttATGGGGGAAATTATTGTACATTAATAatactttcatttaatttttcatttaattttatttcattttcatctgcttttccaTGGCCGGGTCGtggggggcagcagtcttaggagagagtgttttttttatgtaaaacactGCTAATGTGAATATTGTCAGCACTCTTAGAATTAAGAATTAagtaagttattaaaaatatttaaaaagtgtgttaTTTGAATAATCTTTGTTATTTGAAAGTTACAACTTAATGCGAGGGCTTAATTTTTTTCATCTATATAttaatttcagatttattttaacaatctaataGACTATAAAAGGGCGTCACGTCATTGTCCAGTGCAGTAATGTTCTTATTTTAGAATGTCAAAAGTATTATAGCTAAAATATTAGTATAATTGTGACTCATCAAAAGTCTCTGTTgtcattttaatgtttacaaagcagCAGAGCACGTGATTCGTCAGATGCTTTGTCAGCATGTCACGTGATCAATCAGCTGACGCTATATGTAAACTCGTCCGGTCGCCCGGGACGCGGTACAGCGTGAGGACAGACTCTTCATTATTCGCAACTGCCAATAAACAAAACGCGAAGTCACCTTGTTCTCATTGctgttttatttacacacacagttCACGCGTGACTCCTTATCCACAGGCTCTGTTTTCCTGTGCGGGTCGACGGGGATGTAGAGACGGGGGTCTGAAAGTACCTAAGCGCGCCGTCGAGATGAAGCGTCCGGTGTACGAGTTGACAGTTTTCTTACTCTGGACCTTGTTTTTTGGGCCTTTGTGTTTCTCCTACCCTCTTGAAGGAGGAACAGATGTGCCTCAGCTGAGGGTCGTGGAGGAGCTGGACCGGTTGAAGCTCGGTTTCGGATGGAGAAACTTGTCCTGCGTGCTGTGTAAAGCGATCTTCGCCTCTGTCGACATCGCGCTGCTGGTGAGATCTGCTACTGTACTTCCCTCCATGATGGTGCTTGGTGTTTTAAGTCTTCCTGGcgcatttttaattgtttgtgtgAGAGAGTAATAAATGCTTCTtagtttgtattttgaaaatcgAAAGTGAAGTATATAGACTGCAGtttacaaatataaaaccaactttactgaAAATAGTTTAGTTGtgtacagggtcaatgcacaattaacattacattaataAACAGTACATATATGACTGACAATAAACATTTGATACAATAGACATTACTGCAATGTTGCAAGAATGGTTGTTTTTTTGTCTTCAGACATTTGAAAGAGTGTAAAAAAGTCACATCTACAAATAGAAATAGCATAATAACACAAAATACACTATCATATATAAAATAGTGAACACTATAAACACAAGTAAGAATCAAGGGGAACAAGAAAGGAGTATAAAACAACAATGGCAGATGGAGAGGATATCATAGTCAAGAACAAACAGCACAAGTGGATCTACTGTCAATAGTACAGTACTAATGTTGACACTGATAAGTTATCAATAACCAATTTTTCACATAAAACTAAAAAGTATGTAATCTTCTAATTGTTGGTGGGATGAAGTTCCATAACATtcttttataatgtttatatttactcTAAAGTGttccagaattagccaagaatggctgtTTTTCTTCTTCAGACCCTTAACAGAATGTTATAAAGTCACACCTGCAAATAGAAACAGCATAAATACACTGCCACATATGtaaaatatacaaacacaaataataaacCAGAGAAACAAAAAAGgagaataaaacaacaacaataggaCAACATAGACAAAACAATCAGTAGGTCTACTGTCAAGAGTACAGTACTAATGTTGACATTGCTGAGTTGTCATTGTCAATAACCAATTTTTCACATGAAACTGAAAAgaaggaaatgtatgtaatctTCTGATTGTTGGTGGGATGGTGTTCCATAATATTCTTTATAGTGTGCATGTTTATATGTGTTCTGTATAGATGTAGAAACtaattaaacttttttcttttaatgtacattttgatttatAGATATACCATGACGtatagttttttaaaatgtatttactgtagATATGCGTTTTATATATGTTGTATtatgatgtaatacattttatatattcatGTTGTGCCATCTTGATTTTGATATACATTTGAAGTTTCTAGCTAGTTATTTTACATTCTTTGTATTGCATGTACAATTTGTATTTACTTTATTGTAGATAAACCAACTATGATTTCAAACAGCCATGCAAATACTACAGTACAAATATGTATATCTATTTTATCCCATTATAATTGTG
>TCONS_00005144
tcggcgGGGAGGAGATCTCAGACTCGGGCTCTAGTAGGGTGTGGACGCTGGAAGAGTGTCGGGTCCAGACCGTCCCAGTCATCTCCGTTGGTCCACTTCAGCTAAAAGCGGCCATATAAACAGTGCAGCGCAGACACCAGACACTTGCCCTGAGGCTGTGAAGAGACTGTCCCATCGCACCCTTCCCGTTGCTGGATGTCCTGTCCGCCCTCACCTGTTCTCTTCAGGGTCCAGCTGCATCAAACGCCTCTTCCAGGACACTCCTGGTAGGAGGACGATCCATTGGGATAGTGTGAGAGGAGAGAGGGTGCCGAAATGGATGACATCTTCACTCAGTGCCGTGAAGGCAACGCGGTAGCCGTTCGCCTCTGGCTGGACAACACAGAGAATGACCTAAACCAGGGGGATGATCACGGCTTCAGTCCGTTGCACTGGGCGTGCCGCGAGGGCCGTTCGGGTGTTGTGGATATGCTCATCATGAGAGGTGCTCGTATCAATGTGATGAACCGCGGCGACGACACACCCCTGCACCTGGCAGCGAGCCATGGCCATCGTGACATTCTGGCCAAGCTGATTCAGTGTAAAGCAGATACCAATGCGGCAAACGAGCACGGAAACACCCCTCTACATTATGCCTGCTTCTGGGCCCACGATCAGGTGGCGGAGGATCTGGTCAGTAATGGAGCTCAGGTGAGCATCTGCAACAAGTATGGAGAAACTCCAATGGACAAGGCCAAACCACCGCTTGCAGCAAATCTAAAAGACCTGGCAGAGAAACAAGGACAGAGCCTGTCAAAAGTCCCTTACAAGGACAATTTCTGGAAAGGAACAACTCGAACACGACCACGTAATGGCACACTAAACAAGCAAGCTGGCATAGATTATAAGCAGCTTAACATGCTGAACAAGATCAACGAGAACCACTCCGGCGAGCTGTGGAAGGGCCGCTGGCAGGGCACAGAGATTGTGGTCAAGATGCTGCATGTGCGGGAATGGACCACCAGAAAGAGCCGAGACTTTAATGAGGAGTACCCTAAACTAAGAATCTTCTCTCACCCAAACGTGTTGCCCGTGTTGGGGGCGTGTCAGTCTCCACCTGCCCCTCACCCAATCATCATCACACACTCTATGCCCTACGGTTCCCTCTACAACTTGCTGCATGAGGGCACCAACTTAGTAGTGGATCAAAACCAGGCTGTGAAATTTGCTCTGGACATTGCCTGTGGAATGGCTTTCCTACACACTCTTGAGCCCATGATCCCCCGCCATTATCTCAACAGCAAGAGTGTCATGATTGACGAGGACATGACGGCCAGGATAAGCATGGCAGATGTAAAGTTGTCATTTCAGTGTCCTGGCAGGATGTACTCTCCTGCATGGGTGGCACCTGAagCTCTGCAGAAGAAGCCAGAGGAGATTAACCGGCGCTCAGCTGACATGTGGAGCTACGCCGTGCTGCTCTGGGAGCTGGTGAGCAGAGAAGTGCCGTTTGCTGACCTCTCAAACATGGAGATCGGCATGAAGGTGGCGCTAGAGGGACTACGGCCCACCATCCCACCCGGCATCTCCCCTCACATCTGCAAACTCATGAAGATCTGCATGAACGAAGACCCTGCAAAGAGGCCCAAATTCGACATGATCGTGCCCATTCTGGAGAAGATGCAAGACAAATAACCACACTGCACAACACTGACTTCACAGTATTGCCTTAAAGAGAAAGCTCGCTcaaaaatgaacacaaacacaaTATTACCTAACAGATTTAGGTAAAGAAAGAAGgtcttttgaagaatgttggaagccggcagccattgacttccatagtagggaaaaacaaataccatggaagtaaTTGGCTAcgaatttccaacattcttcaaaatatcttctctaggtaagtaaatgataattgaggttttatttttgagtgaactgtctctttaaatttcACCACTCACCAAAGTGCTCTATGCCACTGTAAGTCCTCTGCTACAGAAAGAAAGAACGCTTTGTGGAAGTGctgttgaacatttttaaaaagccacGTTCTCACTATCCTCTATATTCTTATATGCAATCATTGAAAATGgtgcgcgtgtttgtgtgttcatCAGCCTTTACGTGCTCTCAGGAgcgtttacagagaaacactccTCTCAAAACCTCTTTTCTATAGCCATTAAACAGGAAGTGGCGGCAGTGAATGTACAGTAAATATAATGTCAGCTAACCACTCCAAACATCCGCATCTTTTCGCCATTTCTGTCCACTTTGCTTTTTCAAAGGAGTCCTTTTATTAGTTGATGTGTCCGTTATTAGTATTTAAAGCATCCTGCCATTGCATTTACAGTTGCAGATTGTTCCTGATTGCAAAAGTCagatttatttgcattaaaaaatatataaaacagtgcAATAATGCATAAGCTAATGCCATTTTATGCCTtgtcatgtaaaaaaattaattaataaccaAAATAAGAAGTGCCCAGAATATCATGATTGTATTGTCCCTTTCATAGCAAGGAGATTCATGTTATGAACACCCGTTACATTAGATTAGGTAccgtaaatgcaaaaaaataaaggaGACATTTACACACATCACATTAAATGTGAGAAGTCATGTGCCACATATATCATGGGTCAGTTTTCGCATCCCATAAATTGATTTAGATTCATGCATGATTTCTGTTTTGTAACTAACACGCATCCCGCTCCTCATTGTACATGTCAAGCATGTCATGTGCTGAAACGTCTGAGagatttttatactgtatacatatatatgtgtttttttttgtttcatgggTGGTTCGTTCTGCAGCCCATGAGCACTTTTGCTTTTCTGAACACTACATCTATTTACTTCCTTCTGCTCTCAGTGTTCCTCTTTTCAATTTGCCAGTATGCAATAGGAAACCAAGAGACGAAAACAAGCATACTTGACATGCATAATTGtatctttttgttttaattattattatttcacagtgTTTCTTTTTGCGTTTTGAAAAGAAGACAAACAGACTGATTTTCTAACTTATGCTCCGTTTTCTGACCCTGTGAGGTTTTTAATGAACGTTCATGTGGCTTTTCTTCAGTCTTTATTTTGGAGATTTGGGCTGTTTATATTTTATTCCTGATAACTAAAGTTTACTAAAGGAAaataagaacaaaataaaaatgttttggccATG
>TCONS_00005145
GGACGCTGGAAGAGTGTCGGGTCCAGACCGTCCCAGTCATCTCCGTTGGTCCACTTCAGCTAAAAGCGGCCATATAAACAGTGCAGCGCAGACACCAGACACTTGCCCTGAGGCTGTGAAGAGACTGTCCCATCGCACCCTTCCCGTTGCTGGATGTCCTGTCCGCCCTCACCTGTTCTCTTCAGGGTCCAGCTGCATCAAACGCCTCTTCCAGGACACTCCTGGTAGGAGGACGATCCATTGGGATAGTGTGAGAGGAGAGAGGGTGCCGAAATGGATGACATCTTCACTCAGTGCCGTGAAGGCAACGCGGTAGCCGTTCGCCTCTGGCTGGACAACACAGAGAATGACCTAAACCAGGGGTGAGTGCATTCTTGAGAGTTTGCAAGGGTCATAATACGAGCTATTTTTAGAAGGTTTGACGTGGGCTTGTAGAATTTGCTTATTTGTGGTCTTGTACAGACTTTCTGTCAATAGGGGGCGGATTCTTGAaatgttgtgtgtgttttgtgacgaGCTTTTGTCTGGTCTTGTCCCCTAGTTCACCCCTTACACTTTTATCAGTCTTGTAATCCCTAGGCGCAGTGGTGCAGTGACTCAAAGGCAATGAGGGTAGATTTTTATCAGGTTTTGTTTGTGGCACAGATTTCATTCAGTTATTTGGTCTGTCGTGGCAGTACAggtatttttttagattaaatagATGATTTTGAGGATTTAAATAGATTCAATTCAATTTGCTTATTTGTGTATCACTTTTCATTGTACCAAAAGTATTGTACCAAAACAGCTCTACAAATGGT

Function

symbol description
smpd1 Predicted to enable acid sphingomyelin phosphodiesterase activity. Predicted to be involved in ceramide biosynthetic process and sphingomyelin catabolic process. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space and lysosome. Human ortholog(s) of this gene implicated in Niemann-Pick disease; Niemann-Pick disease type A; and Niemann-Pick disease type B. Orthologous to human SMPD1 (sphingomyelin phosphodiesterase 1).

GO:

id name namespace
GO:0046513 ceramide biosynthetic process biological_process
GO:0008152 metabolic process biological_process
GO:0006685 sphingomyelin catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004767 sphingomyelin phosphodiesterase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0061750 acid sphingomyelin phosphodiesterase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG:

id description
ko00600 Sphingolipid metabolism
ko04071 Sphingolipid signaling pathway
ko04142 Lysosome
ko04217 Necroptosis

ZFIN:

id description
ZDB-GENE-040426-1435 Enables protein kinase activity. Acts upstream of or within several processes, including circulatory system development; muscle attachment; and tendon development. Located in Z disc and sarcolemma. Is expressed in brain; cardiovascular system; muscle; myoblast; and somite. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human ILK (integrin linked kinase).
ZDB-GENE-110411-222 Predicted to enable acid sphingomyelin phosphodiesterase activity. Predicted to be involved in ceramide biosynthetic process and sphingomyelin catabolic process. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space and lysosome. Human ortholog(s) of this gene implicated in Niemann-Pick disease; Niemann-Pick disease type A; and Niemann-Pick disease type B. Orthologous to human SMPD1 (sphingomyelin phosphodiesterase 1).

Ensembl:

ensembl_id ENSDARG00000056964 ENSDARG00000076121

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005142 False 2933 mRNA 0.48 6 24709967 24724388
TCONS_00005143 False 6066 mRNA 0.39 12 24722580 24753715
TCONS_00005144 False 3200 mRNA 0.45 13 24725259 24759616
TCONS_00005145 True 803 lncRNA 0.47 2 24752684 24759574

Neighbor

gene id symbol gene type direction distance location
XLOC_002775 si:ch211-287a12.9 coding downstream 20242 24682307 ~ 24689725 (-)
XLOC_002774 proser1 coding downstream 50127 24648903 ~ 24659840 (-)
XLOC_002773 stoml3b coding downstream 61736 24641229 ~ 24648231 (-)
XLOC_002772 NA coding downstream 82529 24613973 ~ 24627438 (-)
XLOC_002771 AL929315.2 coding downstream 254235 24455616 ~ 24455732 (-)
XLOC_002777 timm10b coding upstream 2600 24762216 ~ 24765988 (-)
XLOC_002778 si:ch1073-15f19.2 coding upstream 18673 24778289 ~ 24784446 (-)
XLOC_002779 NA coding upstream 74080 24833696 ~ 24852525 (-)
XLOC_002780 CABZ01058107.1 coding upstream 105919 24865535 ~ 24868581 (-)
XLOC_002781 si:ch211-214k5.3 coding upstream 176149 24935765 ~ 24937070 (-)
XLOC_002770 AL929315.1 non-coding downstream 263975 24439620 ~ 24445992 (-)
XLOC_002768 CU467963.2 non-coding downstream 326586 24383266 ~ 24383381 (-)
XLOC_002764 NA non-coding downstream 660762 23780542 ~ 24049205 (-)
XLOC_002788 NA non-coding upstream 621382 25380998 ~ 25390673 (-)
XLOC_002790 NA non-coding upstream 734557 25494173 ~ 25499474 (-)
XLOC_002792 NA non-coding upstream 927285 25686901 ~ 25687218 (-)
XLOC_002793 NA non-coding upstream 931256 25690872 ~ 25691670 (-)

Expression


Co-expression Network