G854401


Basic Information

Item Value
gene id G854401
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 11781173 ~ 11783404 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU973774
GTTTTCTTTAAAAAGAACATGGACAATCCATCCATGCATTTTGACTACTATTCAGTGGTATGGTTTAGATCTCCTATCCAAACAGAGGATTGGAGGTTAATACAGTACACAATGTGGTTTTCCCCATTTAGATTCATTTTCTATCAAGATATTCCATATGCCATTGAGCGGACACTtatatccaaagcaacttacagtcatgtgtgcatatATTTTACGTATgagtggtcccgggaatcaaacccactactcTGGTGTTACAAGCACCATGTCTtatcaactgagctacaaaggactaACTTCATTCCAAAGTATTTTATGTTGTCAGTTACATTTGTTTACAAGGATACCTTCAGAACCTTTCATATGTAAATATCATATTCTAAGTAACCCTAAAATGTACTATATTTTATATGTAAATAATGACATCCATCAACAAGCTGTAACATTCTCATCCCTGTGAGAACTGAATGAAAGTCTGAGTAATACAGCAGACTGATGTTAATGTTGTTCTTTTCATTATACCTGTAGAATCATAGTGGGAGGTGTCTCACACTGGCCTGTGCATAGtcgaattaagcaataaggcccgaggaggtattttggccatatatcacaaacccctgaggagccttattgctattataaactggttaccaatgtaattagagcagtaaaaatacatgttttgtcatatcaatttcagccaatcagaattcaggcctcaaaccacccagtttgtaaTATGCTGTACCTGGTGATGCAGTGAGCGTAACACACTTTGTAGGCTCACATGAGTAGCCCTGTTCCAGGAGAGTCTGCAAGGTGGTTTTGTGTTACTTCCACAACAGCAGAGCCTATAAAGAGGATTATTCAGCATGTTAAACACTCAACAAAGATGGTTATACGATGACGATGTAAAAGTGAATGCTGCCCATTTTACAGATCTGTAAATATGGGATCATTTCCTTTGTGTGTTTGTCAATCTGAATACTGTACATGTTGGTTACAACCAGAGTCACTGAACTGACAGTGAGGACCTGAGTGcagtttttgttcagtgttttaaAAAACATCATGTTCCTTTGAGTTGATTGTATATTGTTTACCACCACCTTACATCACCTTACTTACCACTTCACTgggctgcaggtagcctaggggttagagtgttggactagtaactgaaaggttgcaagctcaaatccccgagctgacaaggtaaaaatatgttgttctgcccctgaacaaggcagttaacccactgttcctaggccgttattgaaaataagaatttgttcttaactgacttgcctagttaaataaagattaaactAACACCCAGTTCAAAAAGATTAGTCTTACTAAGTACTCTAGTTTACAAGTTCTGGAAAAGAGCATAGAATGACAAGACACACGGTGGCCTTCAAATGGAGACTGGAGCTTTTTTGCACAATGTTGGCTGAATTATATTGTACATAACAAGAAATTATTTGAAAAAGATAAACCTGTACATACTCACTTAATGCACACTATATGGTAACATTATCATAGATCAATCAGAGAGGATTGTATTTGAATATAGTTGATAATTAATTAATGATCAGAAATAGACCCTTCTCAGTcccaaaacaaaaataaataaatagaatatTCAGACCATGCCATTTAAAAAACTTCTATCCTACACAGTTTGAGGTATCAATTATGAAATTAATGCAAATGAGGATGGATCTGTTTACCGTCAAAAACATATAttacaagagagagggagattaaagTATGCAATTTTCTATTTCAGTTGGAGCGATCTGTCTGAGACTGTTTTCTAGCTAGTTATACACAGTGGTAGAGCCCTTGTTCTAAGTGAATACTCAAGTCCTGTAATGTTGTTTTTATTACACGCCCTTCTGAATCTGTGATCCATAAAGAAACCCACAATAGACTGAAGCAGCCACGATAGACCAGCACATAGAAACAGAGTGTTGTTTGGTGTTGTTTTTGATTACAAAAAGGTCAGAAACATTGTGAGCATGTTGGTATAAGAATTACTGAAGATAATTTAGTCTGTTATTGTGAACATGTGAAAACTGAAATAAT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU973774 True 2100 lncRNA 0.37 4 11781173 11783404

Neighbor

gene id symbol gene type direction distance location
LOC110533345 LOC106603865 coding downstream 197893 11567493 ~ 11583280 (-)
LOC110533344 LOC106603866 coding downstream 216960 11561936 ~ 11564213 (-)
LOC110533343 LOC106603867 coding downstream 306472 11467381 ~ 11474701 (-)
LOC118936915 NA coding downstream 689899 11090021 ~ 11091274 (-)
bod1 LOC106603873 coding downstream 751662 11026087 ~ 11029511 (-)
kctd16b LOC106603861 coding upstream 3791 11787195 ~ 11868573 (-)
LOC110534849 LOC106567493 coding upstream 310930 12094334 ~ 12239835 (-)
trnaa-ugc-40 NA coding upstream 414821 12198225 ~ 12198294 (-)
LOC118966708 NA coding upstream 484316 12267720 ~ 12270434 (-)
nfip1 nfip1 coding upstream 622430 12405834 ~ 12431079 (-)
G854158 NA non-coding downstream 8144 11772799 ~ 11773029 (-)
G854155 NA non-coding downstream 9873 11770937 ~ 11771300 (-)
G854154 NA non-coding downstream 10608 11770350 ~ 11770565 (-)
G854125 NA non-coding downstream 32012 11744114 ~ 11749161 (-)
G854116 NA non-coding downstream 41410 11739515 ~ 11739763 (-)
G854416 NA non-coding upstream 28609 11812013 ~ 11814524 (-)
G854428 NA non-coding upstream 54058 11837462 ~ 11903758 (-)
G854430 LOC106603860 non-coding upstream 116733 11900137 ~ 11900919 (-)
G854486 NA non-coding upstream 141308 11924712 ~ 11924940 (-)
G854490 NA non-coding upstream 148305 11931709 ~ 11936634 (-)
G854016 LOC106603864 other downstream 160251 11615256 ~ 11620922 (-)
G853740 NA other downstream 338583 11442252 ~ 11442590 (-)
G853244 NA other downstream 775515 11005109 ~ 11005658 (-)
G852802 NA other downstream 1318523 10462256 ~ 10462650 (-)
G854402 NA other upstream 1716 11785120 ~ 11785853 (-)
G854734 golga7b other upstream 510699 12294103 ~ 12294536 (-)
G855079 sept8 other upstream 797989 12581393 ~ 12611178 (-)
G856922 NA other upstream 2400883 14184287 ~ 14184974 (-)
G856863 LOC106603829 other upstream 2420129 14203533 ~ 14210382 (-)

Expression

G854401 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 5.
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G854401 Expression in each Bioproject

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G854401 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network