G856872


Basic Information

Item Value
gene id G856872
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 14205272 ~ 14207216 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU976538
TGGGCCTTATGCAGCGCCACagatctcctttgcatagagttgttcaagctgttgattgtggcctgtggaatgttgtccgtctcctcttcaatggctggttgaagtttctggatattgccgggatctggaacacgctgtcgtacacgttgatccagagcatcccaaacatgctcaacgggtgacatacagtggggagaacaagtatttgatacactgccgattttgcaggttttcctacttacaaagcacgtagaggtctgtactttttatcataggtacacttcaactgtgagagacggaatctaaaacaaaaatccagaaaatcacattgtataatttttaagtaattcatttgcattttattgcatgacataagtatttgatcacctaccaaccagtaagaattccggctctcacagacctgttagtttttctttaagaagccctcctgttctctactcattacctgtattaactgcacctgtttgaaatcattacctgtataaaagacacctgtccacacactccatcaaacagactccaacctctccacaatggccaagaccagagagctgtgtaggacatcagggataaaattgtagacctgcacaaggctgggatgggctacaggacaataggcaagcagcttggtgagaaggcaacaactgtttggcgcaattattagaaaatggaagaagctcaagatgacggtcaatcaccctcggtctggggctccatgcaagatctcacctagtGGGGCATcagtgatcatgaggaaggtgagggatcagcccagaactacacggcaggatctggtcaatgacctgaagagagctgggaccacagtctcaaagaaaaccattagtaacacattacgccgtcatggattaaaatcctgcagcgcacgcaaggtccccctgctcaagccagcgcatgtccaggcccgtctgaagtttgccaatgaccatctggatgatccagaagaggaatgggagaaggttggggatgcttttctgcaaaggggacaggatgactgcaccgtattgaggggaggatggatggggccatgtattgcgagatcttgacCAACAACCTCcatccctcagtaagagcattgaagatgggttgtggctgggtcttccagcatgacaacgacccgaaacacacagccagggcaactaaggagtggctccgtaagaagtatctcaaggtcctggagtggcctagccagtctccagacctgaacccaatagaaaatctttggagggagctgaaagtccgtattgcccagcgacagccccgaaacctgaaggatctggagcaggtctgtatggaggagtgggccaaaatccctgctgcagtgtgtgcaaacctggttaagaactacaggaaacgtatgatctctgtaattgcaaacaaaggtttctgtaccaaatattaagttctgcttttctgatgtatcaaatacttatgtaatgcaataaaatgctaaataattacttaaaaaacctgcaaaatcggcagtgtatcaaatacttgttctccccattgtatctggtgagtatgcaggccatggaagaactgggacattttcagcatccaggaattgtgtacagatccttgcaacattatcatgctgaaacatgaggtgatggtggtggatgaatggcattacaatgggcctcaggatcttgtcatggtatctctgtgcattcaaattgccatcgataaatgcaattgtgttcgttgtccgtagcttatgcctgcccataccataaccccaccgccatcattgggcactctgttcacaatgttgacatcagcaaaccgctcgtccctgcggttgtgaggctggttggatgaaCTGCTAAATTATCTAACGCAAAATTGGAGGCGGCTtaaggtagagaaattaacaatcaAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU976538 True 1924 TUCP 0.46 2 14205272 14207216

Neighbor

gene id symbol gene type direction distance location
LOC110533376 irf1-2 coding downstream 52623 14148151 ~ 14152649 (-)
slc22a21 LOC106603834 coding downstream 139598 14056934 ~ 14065674 (-)
LOC110533369 LOC106603838 coding downstream 314430 13865575 ~ 13890842 (-)
LOC110533368 LOC106603839 coding downstream 350712 13810494 ~ 13854560 (-)
LOC110533367 dpyl3 coding downstream 416878 13741933 ~ 13788394 (-)
LOC110533380 LOC106603823 coding upstream 349893 14557109 ~ 14794250 (-)
LOC110533381 LOC106603818 coding upstream 773132 14980348 ~ 14996093 (-)
LOC110533382 LOC106603817 coding upstream 792935 15000151 ~ 15017085 (-)
LOC110533383 skp1 coding upstream 922746 15129962 ~ 15139654 (-)
LOC110533384 LOC106603816 coding upstream 933596 15140812 ~ 15154273 (-)
G856879 NA non-coding downstream 90217 14114829 ~ 14115055 (-)
G856859 NA non-coding downstream 112905 14092126 ~ 14092367 (-)
G856857 NA non-coding downstream 113920 14090919 ~ 14091352 (-)
G856853 NA non-coding downstream 119477 14085583 ~ 14085795 (-)
G856852 NA non-coding downstream 121461 14083492 ~ 14083811 (-)
G856934 NA non-coding upstream 3884 14211100 ~ 14211324 (-)
G856935 NA non-coding upstream 4756 14211972 ~ 14212292 (-)
G856938 NA non-coding upstream 7538 14214754 ~ 14214969 (-)
G856940 NA non-coding upstream 8247 14215463 ~ 14215749 (-)
G856941 NA non-coding upstream 8646 14215862 ~ 14216072 (-)
G856922 NA other downstream 20298 14184287 ~ 14184974 (-)
G855079 sept8 other downstream 1594094 12581393 ~ 12611178 (-)
G854734 golga7b other downstream 1910736 12294103 ~ 12294536 (-)
G854402 NA other downstream 2419419 11785120 ~ 11785853 (-)
G854016 LOC106603864 other downstream 2584350 11615256 ~ 11620922 (-)
G858015 NA other upstream 910206 15117422 ~ 15118029 (-)
LOC110534856 LOC106603798 other upstream 1811324 16018538 ~ 16057861 (-)
LOC110533421 LOC106603793 other upstream 1934068 16141284 ~ 16185730 (-)
G859594 NA other upstream 2249332 16456548 ~ 16456847 (-)

Expression


Co-expression Network