G858082


Basic Information

Item Value
gene id G858082
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 15239077 ~ 15240726 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU977808
GGTCTCTGCATATTGTTTATTCCAGTGGTAGTGTTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCAGATTGTTTATTCCAGTGGTAGTGGTCTCTGCAGATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGTTCTCTGCATATTGTTTATTCCAGTGGTAGTGTTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGTTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTAATTCCAGTGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGTTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCAGATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGTTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCAGATGGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCAGATTGTTTATTCCAGCGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGTTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCAGATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGTTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATCGTTTATTCCAGTGGTAGTGTTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTTATTCCAGTGGTAGTGTTCTCTGCATATTGTTTATTCCAGTGGTAGTGGTCTCTGCATATTGTTT

Function

NR:

description
proline-rich extensin-like protein EPR1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU977808 True 1266 lncRNA 0.41 3 15239077 15240726

Neighbor

gene id symbol gene type direction distance location
ube2b ube2b coding upstream 53172 15171314 ~ 15185905 (+)
tcf7 skp1 coding upstream 109167 15066890 ~ 15138685 (+)
LOC110533377 LOC106603825 coding upstream 808791 14279497 ~ 14430286 (+)
LOC110533378 LOC106603820 coding upstream 963879 14224203 ~ 14275198 (+)
LOC118936695 LOC106603828 coding upstream 1015030 14216996 ~ 14224047 (+)
LOC110533411 LOC106603809 coding downstream 258907 15499633 ~ 15523339 (+)
LOC110533412 NA coding downstream 303044 15543770 ~ 15607192 (+)
sytl2a sytl2 coding downstream 374983 15615709 ~ 15662249 (+)
LOC110533414 LOC106603806 coding downstream 422759 15663485 ~ 15666551 (+)
LOC110533415 LOC106603804 coding downstream 440486 15681212 ~ 15993975 (+)
G858078 NA non-coding upstream 4379 15233568 ~ 15234698 (+)
G858073 NA non-coding upstream 11425 15226924 ~ 15227652 (+)
G858052 NA non-coding upstream 36723 15202123 ~ 15202354 (+)
G857880 LOC106567527 non-coding upstream 95347 15143421 ~ 15143730 (+)
G858113 NA non-coding downstream 80319 15321045 ~ 15323946 (+)
G858136 NA non-coding downstream 135301 15376027 ~ 15377099 (+)
G858062 NA non-coding downstream 167138 15407864 ~ 15409328 (+)
G858148 NA non-coding downstream 176833 15414440 ~ 15434748 (+)
G858149 NA non-coding downstream 178529 15419255 ~ 15420793 (+)
G856353 NA other upstream 1464495 13773887 ~ 13774582 (+)
G855498 NA other upstream 2218045 13016534 ~ 13021032 (+)
G855483 LOC106603848 other upstream 2249235 12985031 ~ 12989842 (+)
zcchc10 zcchc10 other upstream 2742822 12485809 ~ 12497278 (+)
G858203 NA other downstream 285663 15526389 ~ 15526807 (+)
G858416 NA other downstream 633303 15874029 ~ 15878692 (+)
G860453 NA other downstream 1861189 17101915 ~ 17102467 (+)
G860570 NA other downstream 2085514 17326240 ~ 17326929 (+)

Expression


Co-expression Network