G858062


Basic Information

Item Value
gene id G858062
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 15407864 ~ 15409328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU977785
GAAGAAGTGACAGAGAgcagagaagtgagagagagagagcagagaagtgTGAGAGcagagaagtgagggagagaaagagcagaaaaagtgagagagagcagaagaagtgagagagagagcagagaagtgagcgagagagcagagaagtgagcgagagagcagagaagtgagcgagagagcagagaagtgacagagagcagagaagaagtgacagagagagcagagaagaagtgacagagagagcagagaagtgacagaaagagagagcagagaagtgacagagagcagagaagaagtgagagagagcagagaagaagtgagagagagcagagaagaagtgagagagagcagagaagaagTGACAGGGAGAGCAGATAAGAAGTGACAGGGAGAGCAGAGaagaagtgagagagagcagagaagaagtgagagagagcagagaagaagtgagagagagcagagaagaagtgacagagagcagagaagaagtgagagagagcagagaagaagtgacagagagagcagagaagaagtgagagagagcagagaagtgacagagcgagagagcagatAAGAGAGCAGAGAagtgacagagcgagagagcagatAAGAGAGAGCAGAAAATAAGtaacagagagagcagaaaataagtaacagagagagcagagaaggagaAGTAACAGAGAGCAGAAAAGAagtaacagagagagcagagaaggagaAGTAACAGAGAGCAGAAAAGAAGtaacagagagagcagaaaagaagtaacagagagagcagaaaaGAAGTAACAGAGAGAGCAGAAAAGAAGtaacagagagagcagaaaagaagtaacagagagagcagaaaagaagtaacagagagagcagaaaataagtaacagagagagcagaaaaTAAGTAACAGAGAGCAGAAAAGgagaagtgaaagagagagcagagaaaaggaagaaattacagaaagagagagcagagaaaaggaaggagagagagagaaatgcaactgaactgacaacaatattttcAAATGTCTCTCCAAGTTGGACTGTTGCAGAGGATGAGTTTTTCACACAAATAGCCAAAGTATCACTCATTAATATATACTCTATCCTattcacagtcacacacaaacacttaccgACACTGTGTTcaggcacacacccacacaacagATTTTTAAAACAACATGGACAGATGGGTATACACACACCATGGGTAGCCTCAGTGTGAAACACAACCCACCGGGAGGACACAGTGAGGTACCACTCAGGCCCTCTCATGCATGTCCGGCTCCTCCATGTTA
>TU977786
GAAGAAGTGACAGAGAgcagagaagtgagagagagagagcagagaagtgTGAGAGcagagaagtgagggagagaaagagcagaaaaagtgagagagagcagaagaagtgagagagagagcagagaagtgagcgagagagcagagaagtgagcgagagagcagagaagtgagcgagagagcagagaagtgacagagagcagagaagaagtgacagagagagcagagaagaagtgacagagagagcagagaagtgacagaaagagagagcagagaagtgacagagagcagagaagaagtgagagagagcagagaagaagtgagagagagcagagaagaagtgagagagagcagagAAGAAGTGACAGGGAGAGCAGAGaagaagtgagagagagcagagaagaagtgagagagagcagagaagaagtgagagagagcagagaagaagtgacagagagcagagaagaagtgagagagagcagagaagaagtgacagagagagcagagaagaagtgagagagagcagagaagtgacagagcgagagagcagatAAGAGAGCAGAGAagtgacagagcgagagagcagatAAGAGAGAGCAGAAAATAAGtaacagagagagcagaaaataagtaacagagagagcagagaaggagaAGTAACAGAGAGCAGAAAAGAagtaacagagagagcagagaaggagaAGTAACAGAGAGCAGAAAAGAAGtaacagagagagcagaaaagaagtaacagagagagcagaaaaGAAGTAACAGAGAGAGCCGAAAATAAGtaacagagagagcagaaaataagtaacagagagagcagaaaataagtaacagagagagcagaaaataagtaacagagagagcagagaagaagtaacagagagagcagaaaaGAAGTAAGAGAGAGCAGAAAAGAAGTAAGAGAGAGCAGAAAAGAAGtaacagagagagcagaaaagaagtaacagagagagcagaaaagaagtaacagagagagcagaaaataagtaacagagagagcagaaaaTAAGTAACAGAGAGCAGAAAAGgagaagtgaaagagagagcagagaaaaggaagaaattacagaaagagagagcagagaaaaggaaggagagagagagaaatgcaactgaactgacaacaatattttcAAATGTCTCTCCAAGTTGGACTGTTGCAGAGGATGAGTTTTTCACACAAATAGCCAAAGTATCACTCATTAATATATACTCTATCCTattcacagtcacacacaaacacttaccgACACTGTGTTcaggcacacacccacacaacagATTTTTAAAACAACATGGACAGATGGGTATACACACACCATGGGTAGCCTCAGTGTGAAACACAACCCACCGGGAGGACACAGTGAGGTACCACTCAGGCCCTCTCATGCATGTCCGGCTCCTCCATGTTA
>TU977787
GAAGAAGTGACAGAGAgcagagaagtgagagagagagagcagagaagtgTGAGAGcagagaagtgagggagagaaagagcagaaaaagtgagagagagcagaagaagtgagagagagagcagagaagtgagcgagagagcagagaagtgagcgagagagcagagaagtgagcgagagagcagagaagtgacagagagcagagaagaagtgacagagagagcagagaagaagtgacagagagagcagagaagtgacagagagcagagaagaagtgagagagagcagagaagaagtgagagagagcagagaagaagtgagaGAGAGCAGATAAGAAGTGACAGGGAGAGCAGAGaagaagtgagagagagcagagaagaagtgagagagagcagagaagaagtgagagagagcagagaagaagtgacagagagcagagaagaagtgagagagagcagagaagaagtgacagagagagcagagaagaagtgagagagagcagagaagtgacagagcgagagagcagatAAGAGAGCAGAGAagtgacagagcgagagagcagatAAGAGAGAGCAGAAAATAAGtaacagagagagcagaaaataagtaacagagagagcagagaaggAGAAGtaacagagagagcagaaaagaagtaacAGAGAGAGCAGAAAAGAAGtaacagagagagcagaaaagaagtaacagagagagcagaaaagaagtaacagagagagcagaaaataagtaacagagagagcagaaaaTAAGTAACAGAGAGCAGAAAAGgagaagtgaaagagagagcagagaaaaggaagaaattacagaaagagagagcagagaaaaggaaggagagagagagaaatgcaactgaactgacaacaatattttcAAATGTCTCTCCAAGTTGGACTGTTGCAGAGGATGAGTTTTTCACACAAATAGCCAAAGTATCACTCATTAATATATACTCTATCCTattcacagtcacacacaaacacttaccgACACTGTGTTcaggcacacacccacacaacagATTTTTAAAACAACATGGACAGATGGGTATACACACACCATGGGTAGCCTCAGTGTGAAACACAACCCACCGGGAGGACACAGTGAGGTACCACTCAGGCCCTCTCATGCATGTCCGGCTCCTCCATGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU977785 False 1308 lncRNA 0.45 2 15407864 15409328
TU977786 False 1442 lncRNA 0.44 2 15407864 15409328
TU977787 True 1170 lncRNA 0.45 5 15407864 15409328

Neighbor

gene id symbol gene type direction distance location
ube2b ube2b coding upstream 221959 15171314 ~ 15185905 (+)
tcf7 skp1 coding upstream 277954 15066890 ~ 15138685 (+)
LOC110533377 LOC106603825 coding upstream 977578 14279497 ~ 14430286 (+)
LOC110533378 LOC106603820 coding upstream 1132666 14224203 ~ 14275198 (+)
LOC118936695 LOC106603828 coding upstream 1183817 14216996 ~ 14224047 (+)
LOC110533411 LOC106603809 coding downstream 90305 15499633 ~ 15523339 (+)
LOC110533412 NA coding downstream 134442 15543770 ~ 15607192 (+)
sytl2a sytl2 coding downstream 206381 15615709 ~ 15662249 (+)
LOC110533414 LOC106603806 coding downstream 254157 15663485 ~ 15666551 (+)
LOC110533415 LOC106603804 coding downstream 271884 15681212 ~ 15993975 (+)
G858136 NA non-coding upstream 30765 15376027 ~ 15377099 (+)
G858113 NA non-coding upstream 83918 15321045 ~ 15323946 (+)
G858082 NA non-coding upstream 167138 15239077 ~ 15240726 (+)
G858078 NA non-coding upstream 173166 15233568 ~ 15234698 (+)
G858073 NA non-coding upstream 180212 15226924 ~ 15227652 (+)
G858148 NA non-coding downstream 8231 15414440 ~ 15434748 (+)
G858149 NA non-coding downstream 9927 15419255 ~ 15420793 (+)
LOC110534855 LOC106603811 non-coding downstream 66554 15208176 ~ 15482337 (+)
G858183 NA non-coding downstream 72103 15481431 ~ 15481887 (+)
G858190 NA non-coding downstream 77286 15486614 ~ 15486946 (+)
G856353 NA other upstream 1633282 13773887 ~ 13774582 (+)
G855498 NA other upstream 2386832 13016534 ~ 13021032 (+)
G855483 LOC106603848 other upstream 2418022 12985031 ~ 12989842 (+)
zcchc10 zcchc10 other upstream 2911609 12485809 ~ 12497278 (+)
G858203 NA other downstream 117061 15526389 ~ 15526807 (+)
G858416 NA other downstream 464701 15874029 ~ 15878692 (+)
G860453 NA other downstream 1692587 17101915 ~ 17102467 (+)
G860570 NA other downstream 1916912 17326240 ~ 17326929 (+)

Expression


Co-expression Network