G858823 (sytl2)


Basic Information

Item Value
gene id G858823
gene name sytl2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 15660843 ~ 15662131 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU978661
TTGGGGTGCCTGAATTAGTGGAAACATTAACTTTGATGAAAAATATATGCTGTTACTATATTGAGTAATgtgaaaaaatgtattttacaaagACAACAATGATAACATAACACCACATTTCTGATTATATATGCTGTTGTATCAATAGTGGAAACATTTTCTTCAGTTAATTTACCATGGAATAACATTATGAAAACATATATAGGAATATATACAAATAGCGATAAATATGCATTGGAATGAATCAATTAAAACAACCTATTTATATCTTAACAATTTCTGAGTAGGTATTTGATCTGTATGACAACAAGCATGATTATGTAAAATGTTAatctttcaaaaaaataaaatacacactTGTAATGTAATTCTAAGAAGAATCTAAGCACCAAGCACAATACTCCAATGTGCCTGTATGGTCTTTCTCTTTAAAAAGTGAGAGATTATATTACTGATTACATTATCGGTTATAAGTTTCATCAAACTGATACACCCAATGAGCAACTTTCTTCTCATTTTGACATCCAACTTTTCACACACCATCTTATTTTGATAAACCTCTTGCCATTATCAACATTCTCAAGGGTATAATATCCTCAACCCATTCATTGTGAGAATGCATCATTCTCTCCCATAAACTTGCTTCTTCAGAGGTTGAATCCATCCAATCCACCTCTAACCCATAACTTTTACCTGTTCCAAGGCCCAGCCTTAAGCCCCCAATGAAATGGTTAGTGAGCCGGTCGTGATCCCACACTGTGACTTCAATGCAGGCCTCTCGTAGGTCGTCCGGCCGAAAGCCATCATAGACCATGGTGTGATTGAACATGGGGTTGGCTGTCTTCTTCACCACCCTAGTCTTCTGTCGGCTTTTCCTGCTCGTGTCTGGAAGCACGGT

Function

symbol description
sytl2 Enables phosphatase binding activity; phosphatidylinositol-4,5-bisphosphate binding activity; and phosphatidylserine binding activity. Involved in vesicle docking involved in exocytosis. Located in exocytic vesicle and plasma membrane.

NR:

description
PREDICTED: synaptotagmin-like protein 2 isoform X11

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU978661 True 898 lncRNA 0.36 2 15660843 15662131

Neighbor

gene id symbol gene type direction distance location
sar1a sar1a coding downstream 161707 15491003 ~ 15499136 (-)
LOC110533385 LOC106603813 coding downstream 471961 15187394 ~ 15188882 (-)
LOC110534908 LOC106603812 coding downstream 489648 15157675 ~ 15171195 (-)
LOC110533384 LOC106603816 coding downstream 506570 15140812 ~ 15154273 (-)
LOC110533383 skp1 coding downstream 521189 15129962 ~ 15139654 (-)
LOC110534856 LOC106603798 coding upstream 356407 16018538 ~ 16057861 (-)
LOC110533417 snrpd2 coding upstream 403120 16065251 ~ 16068108 (-)
LOC110533418 LOC106603795 coding upstream 417499 16079630 ~ 16088437 (-)
LOC110533420 LOC106603794 coding upstream 431784 16093915 ~ 16117060 (-)
LOC110533421 LOC106603793 coding upstream 479187 16141284 ~ 16185730 (-)
G858811 NA non-coding downstream 28448 15631851 ~ 15632395 (-)
G858717 NA non-coding downstream 123526 15536631 ~ 15537317 (-)
G858756 NA non-coding downstream 128486 15532140 ~ 15532357 (-)
G858749 NA non-coding downstream 136263 15524375 ~ 15524580 (-)
G858746 NA non-coding downstream 138964 15520932 ~ 15521879 (-)
G858831 NA non-coding upstream 11405 15673536 ~ 15673934 (-)
G858833 NA non-coding upstream 12620 15674751 ~ 15675255 (-)
G858832 NA non-coding upstream 17485 15679616 ~ 15680008 (-)
G858913 NA non-coding upstream 136762 15798893 ~ 15913311 (-)
G858928 NA non-coding upstream 158327 15820458 ~ 15821201 (-)
G858015 NA other downstream 542814 15117422 ~ 15118029 (-)
LOC110533380 LOC106603823 other downstream 1087939 14557109 ~ 14794250 (-)
G856863 LOC106603829 other downstream 1450461 14203533 ~ 14210382 (-)
G856872 NA other downstream 1453627 14205272 ~ 14207216 (-)
G856922 NA other downstream 1475869 14184287 ~ 14184974 (-)
G859594 NA other upstream 794417 16456548 ~ 16456847 (-)
LOC110533434 LOC106603775 other upstream 1860130 17520259 ~ 17545622 (-)
G862071 tmem132e other upstream 2739364 18401495 ~ 18405409 (-)

Expression


Co-expression Network