G858274


Basic Information

Item Value
gene id G858274
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 15673728 ~ 15674032 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU978052
cctttatggaagagtggcaagaagaaagccatttcctaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggacc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU978052 True 305 lncRNA 0.43 1 15673728 15674032

Neighbor

gene id symbol gene type direction distance location
LOC110533414 LOC106603806 coding upstream 7177 15663485 ~ 15666551 (+)
sytl2a sytl2 coding upstream 11479 15615709 ~ 15662249 (+)
LOC110533412 NA coding upstream 66536 15543770 ~ 15607192 (+)
LOC110533411 LOC106603809 coding upstream 150389 15499633 ~ 15523339 (+)
LOC110534855 LOC106603811 coding upstream 191510 15208176 ~ 15482337 (+)
LOC110533415 LOC106603804 coding downstream 7180 15681212 ~ 15993975 (+)
LOC110533419 LOC106603797 coding downstream 392366 16066398 ~ 16078694 (+)
smtlb LOC100196589 coding downstream 1499777 17173809 ~ 17176871 (+)
LOC110533429 nhlrc3 coding downstream 1671359 17345391 ~ 17359625 (+)
emsy LOC106603772 coding downstream 1688653 17362685 ~ 17395892 (+)
G858176 NA non-coding upstream 50867 15590095 ~ 15622861 (+)
G858225 NA non-coding upstream 90354 15582569 ~ 15583374 (+)
G858204 NA non-coding upstream 146644 15526868 ~ 15527084 (+)
G858196 NA non-coding upstream 183757 15489516 ~ 15489971 (+)
G858195 NA non-coding upstream 184374 15489122 ~ 15489354 (+)
G858275 NA non-coding downstream 6647 15680679 ~ 15680914 (+)
G858304 NA non-coding downstream 54457 15728489 ~ 15729710 (+)
G858330 NA non-coding downstream 89366 15763398 ~ 15763699 (+)
G858377 NA non-coding downstream 147786 15821818 ~ 15830938 (+)
G858452 NA non-coding downstream 254518 15928550 ~ 15930598 (+)
G858203 NA other upstream 146921 15526389 ~ 15526807 (+)
G858148 NA other upstream 238980 15414440 ~ 15434748 (+)
tcf7 skp1 other upstream 561229 15066890 ~ 15138685 (+)
G856353 NA other upstream 1899146 13773887 ~ 13774582 (+)
G855498 NA other upstream 2652696 13016534 ~ 13021032 (+)
G858416 NA other downstream 199997 15874029 ~ 15878692 (+)
G860453 NA other downstream 1427883 17101915 ~ 17102467 (+)
G860570 NA other downstream 1652208 17326240 ~ 17326929 (+)
G860846 NA other downstream 1821580 17495612 ~ 17499171 (+)
cenatac ccdc84 other downstream 3387282 19057354 ~ 19068272 (+)

Expression


Co-expression Network