XLOC_002779


Basic Information

Item Value
gene id XLOC_002779
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24833696 ~ 24852525 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005759
CTAGTGCAGCCCGTCTGAATCTGCTGATAAGAAAGACTGCTCCCCTCATGGTCCACAGCATGCTTATGAAGGGGCGTtatcctgcagagttcagctccaaccctgttTCATCACATCTGAAACCGCTAATCAAGGTTTTCAGGACCTCGGTTCAAAACTtttaggcaggtgtgttgaagataAACTCCCAGGATGTCTGCACTTCAAAAACAAGGTTGAACACCCCTGCACTGTTTTATATAGATTAAAGGCATGTTGGAAAGGCACGCCAACCTAAATGTAATGCTGTGGAGTGACATATTTTCTATTCATTCTGCAGACGCTATGCTTCATATTAGAAAGATGAAAAAGCAGTTGTTCATCAGGGTACATGAAAAGATGATGAACTGTGCAGGcagagggagggagagaaagagagatgatgGGAGAAGAACACTACAAAAGCACATCTCGCCCTAATCACTCTGATGAAAGCTGAATGAACTGGTTTATGGCTGAAGCCGCTTTTCGTCTGAGCAAGGAACATGAAGAAACTCCCTGGGAGAGATTGGAAAACGAGGTGTGGAAATTTAGAAAATGAGAAATTCGACTTGtaatgcttttgtttttgtgGCCCAGCGAGAGCTTGGTTAAGCAAGGTCATTACTTTGATACAAAATTATTTCACTTACTGGTTCATGGGATACTGTAACACACactctcttaaagggatagtctacccaaaaataaaaatattgtcatcaTTTGACATATTCACCCTCCACATGTTCCAAACCTGATTGAGATTTAgattttgaagatattttgaagaaatttgtaaacctgtaagcattgacttccatagtattagttTTTCCTGCTATTAATGTAAAGGGGTACAGGTTTTATAGCTCCCTTTAAAATATCTACCTTTcttttcaacaaaataaagaagctcataaagatttggaaccacttgagggtgagtaaaaagACAGTAAATTTGGATTTTTGAAATCCAATTTTTGAATTTCAGAAATGGCAGGCCCTAGTAGCCCCTCCCCCTTTTCAAAATCAGCCAATAGCATTAATTTAAATCAAAACACTTCCAGGAAGAGCTTTTGAGTTCTATTGCGTACTTTTTTCTCTGTAATTCGGTGTGGCGATTTTAACATGAAACAGACTTTATTCACCTCATGCATATTTACATCGTCTGTATTCCTATGTACTGTAGTTGTATTTACCACACAAAAATGAACACTGTGTGTAATATTCCACTTTGAGTCTCCTAGTGTCCTCTATGCTGATTTTGTATACGTTTGTGCAGTGTATTTCCCTCATCGAGGCTTGCTGACTAATAAGGAGTTCAGATAAACACAGTTTGAATACCGTTGATTATTTTCTTACAAGCGTTTAAGCGGACCCTCAGAATTAACTCTTTTTCAACATTCAGTAtgaaacttggataggtgacaagacttttgtcaagtagtgtatatGGATGCTAACACCAAAaactagatttttattttatt
>TCONS_00006048
GTTATTAATGGCTGCCGCCTGTCTGCACTTGACGTGTGAACATCGAACAAATTAACCATAACTTAACTACTGTTCTTGGCTACATTAGATACAGTTTACAGATATCTGTTTATATCATTTATTTCGACAAGGTTGAGAAAGGATGAAGAATGAAAGAAAAGGATGTTTGCTTTGTGCATCGATAAAGGTGTTTCCCTTACAGCTAATCAAACCTATTACAACATGGCTGTGCTGTTTGCTTGTCCAGATACTTTGGCCCATAAGCAACATTGTCACAGTCATCAGGAGAGGATGTTCTAGTGCAGCCCGTCTGAATCTGCTGATAAGAAAGACTGCTCCCCTCATGGTCCACAGCATGCTTATGAAGGGGCGTtatcctgcagagttcagctccaaccctgttTCATCACATCTGAAACCGCTAATCAAGGTTTTCAGGACCTCGGTTCAAAACTtttaggcaggtgtgttgaagataAACTCCCAGGATGTCTGCACTTCAAAAACAAGACGCTATGCTTCATATTAGAAAGATGAAAAAGCAGTTGTTCATCAGGGTACATGAAAAGATGATGAACTGTGCAGGcagagggagggagagaaagagagatgatgGGAGAAGAACACTACAAAAGCACATCTCGCCCTAATCACTCTGATGAAAGCTGAATGAACTGGTTTATGGCTGAAGCCGCTTTTCGTCTGAGCAAGGAACATGAAGAAACTCCCTGGGAGAGATTGGAAAACGAGGTGTGGAAATTTAGAAAATGAGAAATTCGACTTGtaatgcttttgtttttgtgGCCCAGCGAGAGCTTGGTTAAGCAAGGTCATTACTTTGATACAAAATTATTTCACTTACTGGTTCATGGGATACTGTAACACACactctcttaaagggatagtctacccaaaaataaaaatattgtcatcaTTTGACATATTCACCCTCCACATGTTCCAAACCTGATTGAGATTTAgattttgaagatattttgaagaaatttgtaaacctgtaagcattgac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005759 False 1514 lncRNA 0.38 2 24833696 24835335
TCONS_00006048 True 1027 lncRNA 0.40 5 24834374 24852525

Neighbor

gene id symbol gene type direction distance location
XLOC_002778 si:ch1073-15f19.2 coding downstream 49250 24778289 ~ 24784446 (-)
XLOC_002777 timm10b coding downstream 67708 24762216 ~ 24765988 (-)
XLOC_002776 smpd1 coding downstream 74080 24709967 ~ 24759616 (-)
XLOC_002775 si:ch211-287a12.9 coding downstream 143971 24682307 ~ 24689725 (-)
XLOC_002774 proser1 coding downstream 173856 24648903 ~ 24659840 (-)
XLOC_002780 CABZ01058107.1 coding upstream 13010 24865535 ~ 24868581 (-)
XLOC_002781 si:ch211-214k5.3 coding upstream 83240 24935765 ~ 24937070 (-)
XLOC_002782 si:ch211-214k5.3 coding upstream 106721 24959246 ~ 24961310 (-)
XLOC_002783 cd209 coding upstream 118948 24971473 ~ 25028527 (-)
XLOC_002784 mtnr1bb coding upstream 182934 25035459 ~ 25069207 (-)
XLOC_002772 NA non-coding downstream 206258 24613973 ~ 24627438 (-)
XLOC_002771 AL929315.2 non-coding downstream 377964 24455616 ~ 24455732 (-)
XLOC_002770 AL929315.1 non-coding downstream 387704 24439620 ~ 24445992 (-)
XLOC_002768 CU467963.2 non-coding downstream 450315 24383266 ~ 24383381 (-)
XLOC_002764 NA non-coding downstream 784491 23780542 ~ 24049205 (-)
XLOC_002788 NA non-coding upstream 528473 25380998 ~ 25390673 (-)
XLOC_002790 NA non-coding upstream 641648 25494173 ~ 25499474 (-)
XLOC_002792 NA non-coding upstream 834376 25686901 ~ 25687218 (-)
XLOC_002793 NA non-coding upstream 838347 25690872 ~ 25691670 (-)
XLOC_002802 NA non-coding upstream 1588527 26441052 ~ 26447171 (-)

Expression


Co-expression Network