G872898


Basic Information

Item Value
gene id G872898
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 26574318 ~ 26574990 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU993794
atattacagtttttaatgtcccgttggtagtatagtcttgatcggagctcatccattttattatccaatgattgcacattggctaataggactgatggtagaggcagattacGTACACaccgtcggatccttacaaggcaccccgacctacatcccctatatctctgtctcttcttcatgcgaatgacggggatttgggccttgtcgggtgtctgaagtaaatcctttgcgtctttgtccagtacgaggtgagtaatcgctgtcctgatatccagaagctctttttggtcataagagaccgTGGCAGAAACATATGTGCAAAATtagttacaaataacgtgaaaaaacacacaatagcacaattggttaggagtcCGTAAACGGCGGCCATGTCCTCCGGCGCTATACTACTACACGTCTTaacaacatacactaccgttcaaaagttctgggtcacttagaaatgtccttgtttttgaaagaaaagcacatagTACACatcattgtacgagatcttcagtttcttggcaatttctcgcatgaaatagtcttaatttctcagaacaagaatagactcacgagtttcagaagaaaggtctttgtttctggccattttgagcctgtaatcgaacccacaaatgctgatgctccagacactcaactagtctaaaga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU993794 True 673 lncRNA 0.42 1 26574318 26574990
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110533559 LOC106603447 coding downstream 32348 26433642 ~ 26541970 (-)
pigp pigp coding downstream 205439 26365916 ~ 26368879 (-)
LOC110533555 hlcs coding downstream 283792 26286247 ~ 26290526 (-)
LOC110533553 LOC106603442 coding downstream 337404 26154607 ~ 26236914 (-)
LOC110533551 NA coding downstream 440369 26131189 ~ 26133949 (-)
LOC110533560 erg coding upstream 33399 26608389 ~ 26686701 (-)
psmg1 psmg1 coding upstream 181465 26756455 ~ 26764439 (-)
LOC110533564 LOC106603607 coding upstream 193347 26768337 ~ 26774064 (-)
LOC110533565 prkrip1 coding upstream 207872 26782862 ~ 26792664 (-)
LOC110533567 vps37d coding upstream 231124 26806114 ~ 26847884 (-)
G872895 NA non-coding downstream 2376 26571729 ~ 26571942 (-)
G872882 NA non-coding downstream 24784 26549292 ~ 26549534 (-)
G872669 NA non-coding downstream 121444 26212642 ~ 26452874 (-)
G872735 NA non-coding downstream 218199 26346001 ~ 26356119 (-)
G872899 NA non-coding upstream 938 26575928 ~ 26576156 (-)
G872900 NA non-coding upstream 1448 26576438 ~ 26576711 (-)
G872926 NA non-coding upstream 52615 26627605 ~ 26654216 (-)
G873003 NA non-coding upstream 199419 26774409 ~ 26774711 (-)
G873007 NA non-coding upstream 202264 26777254 ~ 26777475 (-)
G866654 NA other downstream 4750697 21819111 ~ 21823621 (-)
G865988 LOC106578276 other downstream 4814466 21759124 ~ 21759852 (-)
G865899 cssa04h11orf63 other downstream 4881121 21691763 ~ 21693197 (-)
G863863 NA other downstream 6713707 19859070 ~ 19860611 (-)
G862927 NA other downstream 7546740 19025342 ~ 19027578 (-)
LOC110533569 LOC106567674 other upstream 315035 26890009 ~ 26911668 (-)
G873209 orai2 other upstream 587910 27162900 ~ 27164550 (-)
LOC110533580 tex14 other upstream 777403 27330589 ~ 27366556 (-)
G873784 LOC106573797 other upstream 1007939 27582929 ~ 27584262 (-)
G874706 NA other upstream 1965239 28540229 ~ 28543267 (-)

Expression

G872898 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
End of interactive chart.

G872898 Expression in each Bioproject

Bar chart with 19 bars.
G872898 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Co-expression Network