G873490


Basic Information

Item Value
gene id G873490
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 27649172 ~ 27649380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU994429
ATGTTACTTGAGTCATACAAGGCCTGAGGAAGCGATGTGTCCCATGAGTAGGAGGCACGGTGTGACGGGATCTGGGTCTGCTACATCAGAGGAGATGTATCCAAGGGGTTTTGCGTTCAAGATTCACTCCACTTAGGTAAGTACAGTGAAGAGCAGGGTTTCAATAACGGTCTGTTCCTTGAGTATGACCTTGAGAACAGTCTTCACTG

Function

NR:

description
uncharacterized protein LOC111501730

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU994429 True 209 lncRNA 0.48 1 27649172 27649380

Neighbor

gene id symbol gene type direction distance location
ppm1e ppm1e coding upstream 152435 27409651 ~ 27496872 (+)
LOC110533582 rad51c coding upstream 252454 27366588 ~ 27396718 (+)
LOC110533584 ska2 coding upstream 318588 27309669 ~ 27330584 (+)
LOC110533579 rasl10b coding upstream 361467 27272327 ~ 27287705 (+)
ap2b1 ap2b1 coding upstream 380385 27177610 ~ 27268794 (+)
LOC110533592 LOC106568026 coding downstream 231012 27880392 ~ 27888907 (+)
LOC110533593 LOC106603472 coding downstream 342300 27991680 ~ 28004015 (+)
LOC118936920 LOC106571430 coding downstream 493933 28143313 ~ 28144703 (+)
LOC110533598 LOC106603479 coding downstream 513414 28162794 ~ 28171287 (+)
LOC110534879 LOC106603480 coding downstream 653534 28302914 ~ 28321189 (+)
G873459 NA non-coding upstream 44605 27604097 ~ 27604567 (+)
G873443 NA non-coding upstream 63779 27584245 ~ 27585393 (+)
G873442 LOC106603469 non-coding upstream 73107 27571833 ~ 27576065 (+)
G873438 NA non-coding upstream 80681 27568153 ~ 27568491 (+)
G871910 NA non-coding upstream 102144 27546790 ~ 27547028 (+)
G873496 NA non-coding downstream 7696 27657076 ~ 27657464 (+)
G873497 NA non-coding downstream 14598 27663978 ~ 27665178 (+)
G873499 LOC106568027 non-coding downstream 17768 27667148 ~ 27667432 (+)
G873504 NA non-coding downstream 24899 27674279 ~ 27674648 (+)
G873508 LOC106603419 non-coding downstream 28421 27677801 ~ 27678104 (+)
LOC110534876 LOC106603451 other upstream 790069 26848371 ~ 26860066 (+)
ypel2a LOC106603438 other upstream 1552372 26079908 ~ 26096800 (+)
G870863 NA other upstream 1823784 25820346 ~ 25825388 (+)
G874108 pgk other downstream 440526 28089906 ~ 28117360 (+)
G874438 LOC106603484 other downstream 907160 28556540 ~ 28557644 (+)
G874378 NA other downstream 928072 28577452 ~ 28584415 (+)
G874510 NA other downstream 1078394 28727774 ~ 28738905 (+)

Expression


Co-expression Network