G873497


Basic Information

Item Value
gene id G873497
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 27663978 ~ 27665178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU994436
GCCCCTATAAATAAGTAgaacaaaaaaatgtaacaaaaaaaaCTTTGTTGAAGTGATCTACTGTGAGTCGTTAATATATGGCAATAAAGGAGACCTAATGTATTTGTGAGTCTGCTATGCAGTAAGTGATAACTTGGaaaacagctttagaagaaaGAAAGGGTGGCAGTTGTGCACTCTGTGTGCAGGCATGTACAAATCAAAGACGTATAAAACACGCACAGAGCCAATCACACTTAGGGGTGTGTATGGCAGAGCAGGGCAGCTAGTCCTCTCTAACACCCTTACACCCCTTTCCTACAGCACGTGCATACAACATCACACAAGCACACGTCTACTTGCGTACACGTACGTGTGCtctcacacactcaaacacagagggagaggcagtGGGCGGGCAGGCACTGTGAGCTTGTGGCATAGGAGGAACGGGAGAGGCGGGAGAAGGTTGTGATCGGTGTGTGCGAAGGGGTTTCTACTGTTCTACCATGTctgggagagggaggatgggttgagggttgagtatAAAATGAATGTCTTTGTTTCTTCCATTGACCCGTGTCAAGTGATCTTAACCTCTGAGATATATTCACGAGGCAAGCCAAGAGTTTCAGCTGAAGATAAGAGGACTTGTTGAGACCAGTGGAGAATGGAGATGCTACATAACAGTCCTGAATTGATCTTAAAACTGTTCATATAAGGAAGAGAGCGCATTAAGACTGGTGGAAGAATCAAGCTCGACTTTGAAACAGAGACGACCAAATTGGATGGGGGATGTCACATCAACAGTACTTTGGATAGAACTTTTGGTATTGGTTATTAAATAAGTAAAAATGTACCTTGAAATATCTCTACTAAGTACGGGTACATTTGGCCTCTTGACCTCTGAGCAAACCAACATGACAGCCTGTGGAGCATATTTCTCAGAGGGGTTTAAAGGAGGGACGTATGACAGGTCGACCATGACTAGATCAGTCCTGTAGCTCGTCGGTATGGGAATACACAAGCAGAGGAGAGTCAATCTCTTCCACCGACTCAGCGCACCGCATGCAACAGGAACGGGGGTTTCTTGTCTTTCTTTTTCTGTCTTTTGTTTTGACAatgtacatatatacatacaaccATAGGTAAAGAGTTGAGAGCAAAAGAGCCTGAACCTTGGAATATACAGTAAAGTGAGCTGTGCATCTCCTGGCTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU994436 True 1201 lncRNA 0.44 1 27663978 27665178

Neighbor

gene id symbol gene type direction distance location
ppm1e ppm1e coding upstream 167241 27409651 ~ 27496872 (+)
LOC110533582 rad51c coding upstream 267260 27366588 ~ 27396718 (+)
LOC110533584 ska2 coding upstream 333394 27309669 ~ 27330584 (+)
LOC110533579 rasl10b coding upstream 376273 27272327 ~ 27287705 (+)
ap2b1 ap2b1 coding upstream 395191 27177610 ~ 27268794 (+)
LOC110533592 LOC106568026 coding downstream 215214 27880392 ~ 27888907 (+)
LOC110533593 LOC106603472 coding downstream 326502 27991680 ~ 28004015 (+)
LOC118936920 LOC106571430 coding downstream 478135 28143313 ~ 28144703 (+)
LOC110533598 LOC106603479 coding downstream 497616 28162794 ~ 28171287 (+)
LOC110534879 LOC106603480 coding downstream 637736 28302914 ~ 28321189 (+)
G873496 NA non-coding upstream 6514 27657076 ~ 27657464 (+)
G873490 NA non-coding upstream 14598 27649172 ~ 27649380 (+)
G873459 NA non-coding upstream 59411 27604097 ~ 27604567 (+)
G873443 NA non-coding upstream 78585 27584245 ~ 27585393 (+)
G873442 LOC106603469 non-coding upstream 87913 27571833 ~ 27576065 (+)
G873499 LOC106568027 non-coding downstream 1970 27667148 ~ 27667432 (+)
G873504 NA non-coding downstream 9101 27674279 ~ 27674648 (+)
G873508 LOC106603419 non-coding downstream 12623 27677801 ~ 27678104 (+)
G873511 NA non-coding downstream 18463 27683641 ~ 27683863 (+)
G873514 NA non-coding downstream 27345 27692523 ~ 27692780 (+)
LOC110534876 LOC106603451 other upstream 804875 26848371 ~ 26860066 (+)
ypel2a LOC106603438 other upstream 1567178 26079908 ~ 26096800 (+)
G870863 NA other upstream 1838590 25820346 ~ 25825388 (+)
G874108 pgk other downstream 424728 28089906 ~ 28117360 (+)
G874438 LOC106603484 other downstream 891362 28556540 ~ 28557644 (+)
G874378 NA other downstream 912274 28577452 ~ 28584415 (+)
G874510 NA other downstream 1062596 28727774 ~ 28738905 (+)

Expression


Co-expression Network