G873724


Basic Information

Item Value
gene id G873724
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 28010113 ~ 28011507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU994670
caagcttgtaacgtcataacCAAGacaactcgaggctgtaatcgctgccaaaggtgcttcaacaaagtactgagtaaatggtctgaatacttatgtaaatgtaatataatttttttttttgcgaaaatctctaaaaacctgtttttactttgtcattatgcagTATTGTGTAAATtggtgaggggaaaaaaaacaatttaatccattttagaataaggctgtaacgtaatttttttttttaagtcaaggggtctgaatactttaaaatgcactgtatataaacaatgCCAATCAAGCTTGTAAATTAGAAGGACAGGTAATTACCAGAATGTCTGTTCGTTGCATAAACTAGAAGTTGAAATCCCAACTGACTATTTTAGGCCTAAAATAATTTGAAGCAAGTTTGGGTGGAAGAACCTAACCAAACCCAGCCAGACTGGAATGAATTACACTTAACAGGTATGGTGGAGAACCTTATAACTGAAGCATAGGCACATTGGTGAACACCAAACCTCTTCTACTGTACTTCAAAGAGACTGAACCCATCCAGTGGGGTCACACATGCAGCACATTGGACCACAGTAGAAAGGTGTGATTCTCGCTCCCCTATGTTCTCCACTGTGACATGTGAGGCTGGGCCCCCAATACTTTAAACAGTGCATTGTGGTCCTTGGCTGGCAGTGCCATGTAACCGAATGGCTTCTAAAAACCTATTCCATTCGGTTCAGTTAAATGATACACATGCCATACACACAGTATCTAAATACAGTATTTACAGGTTAAAATAATGTTTGTAGTTTACAATATATCTTTTGATTACCCAAGTGCCACATCTAACATTGGTGAATAATGTACTACCACACATAAATAAGAATACCTAAGTCAGACTAAATGTTAAAAAACAGCGTTTTGAAACACACTCAGAAAAATAAGTAGTGCAATAAATGCAATGAATGGTAGCCAAGAAATTTGGTCCAAGGGGGCTAGTTAACCAATAGCCTCCAGCAACACTGTACAAGAGAATTAATTGATCATTCTGATGACACTAAAACCTCCTGACTCAAACTGTACGTGGTATTAATTAAAACACGGTATTGTTCATTAAAAACACATCTAGAAAAATAGTGCATTTTA
>TU994671
acgtaatttttttttttaagtcaaggggtctgaatactttaaaatgcactgtatataaacaatgCCAATCAAGCTTGTAAATTAGAAGGACAGGTAATTACCAGAATGTCTGTTCGTTGCATAAACTAGAAGTTGAAATCCCAACTGACTATTTTAGGCCTAAAATAATTTGAAGCAAGTTTGGGTGGAAGAACCTAACCAAACCCAGCCAGACTGGAATGAATTACACTTAACAGGTATGGTGGAGAACCTTATAACTGAAGCATAGGCACATTGGTGAACACCAAACCTCTTCTACTGTACTTCAAAGAGACTGAACCCATCCAGTGGGGTCACACATGCAGCACATTGGACCACAGTAGAAAGGTGTGATTCTCGCTCCCCTATGTTCTCCACTGTGACATGTGAGGCTGGGCCCCCAATACTTTAAACAGTGCATTGTGGTCCTTGGCTGGCAGTGCCATGTAACCGAATGGCTTCTAAAAACCTATTCCATTCGGTTCAGTTAAATGATACACATGCCATACACACAGTATCTAAATACAGTATTTACAGGTTAAAATAATGTTTGTAGTTTACAATATATCTTTTGATTACCCAAGTGCCACATCTAACATTGGTGAATAATGTACTACCACACATAAATAAGAATACCTAAGTCAGACTAAATGTTAAAAAACAGCGTTTTGAAACACACTCAGAAAAATAAGTAGTGCAATAAATGCAATGAATGGTAGCCAAGAAATTTGGTCCAAGGGGGCTAGTTAACCAATAGCCTCCAGCAACACTGTACAAGAGAATTAATTGATCATTCTGATGACACTAAAACCTCCTGACTCAAACTGTACGTGGTATTAATTAAAACACGGTATTGTTCATTAAAAACACATCTAGAAAAATAGTGCATTTTAACACACCCTAGTTAAACACCAGACATATATTTAAACaccaaacatatttttttttttatgaaaaaaaaaaagtcatcCTTCACCTATTTTGAAAGTGTGTGTATgaaggtgtgagtgtgtgagtgtgtcgaTAGTGCACAAACACACTTGTCCTCCCGTCCTGTCCTGTGACCTATAGAGGCCACGGTTCAGAGGTCAGTGGTTGAGTTTCAGATGAGGACCTCCACCATGTCGTTGTCCAACTCCTGTTGGGAGGCTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU994670 False 1134 lncRNA 0.37 1 28010113 28011246
TU994671 True 1172 lncRNA 0.39 1 28010336 28011507

Neighbor

gene id symbol gene type direction distance location
LOC110533593 LOC106603472 coding upstream 6098 27991680 ~ 28004015 (+)
LOC110533592 LOC106568026 coding upstream 121206 27880392 ~ 27888907 (+)
ppm1e ppm1e coding upstream 513376 27409651 ~ 27496872 (+)
LOC110533582 rad51c coding upstream 613395 27366588 ~ 27396718 (+)
LOC110533584 ska2 coding upstream 679529 27309669 ~ 27330584 (+)
LOC118936920 LOC106571430 coding downstream 131806 28143313 ~ 28144703 (+)
LOC110533598 LOC106603479 coding downstream 151287 28162794 ~ 28171287 (+)
LOC110534879 LOC106603480 coding downstream 291407 28302914 ~ 28321189 (+)
LOC110533601 LOC106603421 coding downstream 367922 28379429 ~ 28388942 (+)
LOC110533603 LOC106603482 coding downstream 382688 28394195 ~ 28412922 (+)
G873712 NA non-coding upstream 33786 27976087 ~ 27976327 (+)
G873521 NA non-coding upstream 306924 27702967 ~ 27703189 (+)
G873519 NA non-coding upstream 309520 27699799 ~ 27700593 (+)
G873517 NA non-coding upstream 314113 27695751 ~ 27696000 (+)
G873515 LOC106603419 non-coding upstream 315569 27694156 ~ 27694544 (+)
G873728 LOC106603473 non-coding downstream 3398 28014905 ~ 28015174 (+)
G873727 LOC106603473 non-coding downstream 4356 28015863 ~ 28016094 (+)
G873729 LOC106603473 non-coding downstream 4904 28016411 ~ 28016934 (+)
G873731 NA non-coding downstream 7406 28018913 ~ 28019330 (+)
G873733 NA non-coding downstream 8699 28020206 ~ 28020458 (+)
ap2b1 ap2b1 other upstream 741319 27177610 ~ 27268794 (+)
LOC110534876 LOC106603451 other upstream 1151010 26848371 ~ 26860066 (+)
ypel2a LOC106603438 other upstream 1913313 26079908 ~ 26096800 (+)
G870863 NA other upstream 2184725 25820346 ~ 25825388 (+)
G874108 pgk other downstream 78399 28089906 ~ 28117360 (+)
G874438 LOC106603484 other downstream 545033 28556540 ~ 28557644 (+)
G874378 NA other downstream 565945 28577452 ~ 28584415 (+)
G874510 NA other downstream 716267 28727774 ~ 28738905 (+)

Expression


Co-expression Network