G874135


Basic Information

Item Value
gene id G874135
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 28143509 ~ 28143725 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU995096
ATATTACACATAGGGCGACAATATATTTCAAACAGTTTCATCATGATAATGTGTGTAGCCTGCAGAAAAACGATTACAACCTAACTAGCACATTATTGATTTGATTAACTTTCATTGAGGTGACATCATAAAGGTTTTCTGTGATTGTATTGACTAGGTCCTGAGCTCAGTGAGGGGAATTTCCAATGCTGTAGGCTAACTTAAAAGAAGTCTATAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU995096 True 217 lncRNA 0.35 1 28143509 28143725

Neighbor

gene id symbol gene type direction distance location
LOC110533593 LOC106603472 coding upstream 139494 27991680 ~ 28004015 (+)
LOC110533592 LOC106568026 coding upstream 254602 27880392 ~ 27888907 (+)
ppm1e ppm1e coding upstream 646772 27409651 ~ 27496872 (+)
LOC110533582 rad51c coding upstream 746791 27366588 ~ 27396718 (+)
LOC110533584 ska2 coding upstream 812925 27309669 ~ 27330584 (+)
LOC110533598 LOC106603479 coding downstream 19069 28162794 ~ 28171287 (+)
LOC110534879 LOC106603480 coding downstream 159189 28302914 ~ 28321189 (+)
LOC110533601 LOC106603421 coding downstream 235704 28379429 ~ 28388942 (+)
LOC110533603 LOC106603482 coding downstream 250470 28394195 ~ 28412922 (+)
LOC110533604 LOC106603483 coding downstream 275598 28419323 ~ 28543267 (+)
G874133 NA non-coding upstream 1773 28141485 ~ 28141736 (+)
G874127 NA non-coding upstream 8490 28134813 ~ 28135019 (+)
G874096 NA non-coding upstream 59222 28084033 ~ 28084287 (+)
G873759 NA non-coding upstream 63624 28055071 ~ 28079885 (+)
G873754 NA non-coding upstream 93524 28049694 ~ 28049985 (+)
G874286 NA non-coding downstream 101537 28245262 ~ 28245462 (+)
G874406 NA non-coding downstream 298172 28441897 ~ 28442894 (+)
G874431 NA non-coding downstream 379666 28523391 ~ 28524965 (+)
G874108 pgk other upstream 26149 28089906 ~ 28117360 (+)
ap2b1 ap2b1 other upstream 874715 27177610 ~ 27268794 (+)
LOC110534876 LOC106603451 other upstream 1284406 26848371 ~ 26860066 (+)
ypel2a LOC106603438 other upstream 2046709 26079908 ~ 26096800 (+)
G874438 LOC106603484 other downstream 412815 28556540 ~ 28557644 (+)
G874378 NA other downstream 433727 28577452 ~ 28584415 (+)
G874510 NA other downstream 584049 28727774 ~ 28738905 (+)
G874876 NA other downstream 686047 28829772 ~ 28830164 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G162408 NA non-coding CI01000030 null 10344281 ~ 10354263 (+)
eurasian perch (Perca fluviatilis) G137046 NA non-coding NC_053124.1 CM020921.1 28176664 ~ 28178371 (+)