G874237


Basic Information

Item Value
gene id G874237
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 28169421 ~ 28171284 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU995220
CAGAAATCTAGTCTTTATTTTTTCAATTTACAACATGCTACAAAACAGTCCACACAATGAATGATCATATCAGCCGACTGACTCTCTGTGGACCTGTAATGGTGTTGGGACTATATACATGTTATAATATCTTCAAGGCATCAAATAGACGTGGGACTGCAAACAACCTCTTGCTTTGTGCCTGTGCCCCTTGCAATAACAGTCCTGTAAACCATTCATACAAATGAGCTGTGAATGTGAACTAGTCCTCTTTCTCAGGCACCAGGTCTGCGTCCTGGGGAGTGGCACCACTagaaggtgctgtgtgtgtgAACTAGTCCTCTTTCTCAGGCACCAGGTCTGCGTCCTGGGGAGTGGCACCACTagaaggtgctgtgtgtgtgtgtgtaaacaataACATGTTTGATGAAGTGTATGTACACTTGAATGGAGCCTTCTATACACAGCTAATGATGGATATGTGATTCATGCCTGTGGGCCCATTGATGCTGCTTACTTCTAGTACCCTACAGGCACAACTTCAGTGGGACTGAGATAAACCCTCAGAGGTTTCAGAATTCTCTTTCAATTATATTTGTACTCAAATGCAATAATAGCTCTAACTAAGCTACATTTTCACACACATTGGTAAAATCAAGTAAAAATCTGCCATTGGCTAGACTGTCTCAAAAGGTCAAAGGTTTCTTGAAAAGTGTAAACAGTAACAACACATTCACAGAAAATTGCAACTTGTGTGGAGTAACGACAATGGTCAGCCACGGTGATGAGGCGTCCGTAACATTGAAATAGTGACTTGGAGATTACATTGAACATTAGTTAACATAGCTGTATGTAGGGTTTCTttgagtgtatatacagtatatatatatatatatatatagtatatatatatatatatagtatatatatatatatatatatataaataagccatttagcagacagttttatccaaagtgacttacagtaaggcgttcatatattttacatatgggtggcccAGGGAATCAAACCCTCAACCCTGGCGGTGTAagggccatgctctaccaactgactTACAGAGGACCACATAAGCTATATCTTGTACTTTTAGCCATGGCGACATAACTATCATATTACATTTACCCACAAGCTTTTTCCTGTGTTGGTGCAATCTTTCTAGTTGCATTCCATACTTTCAACTGTATCAGAATTTATGACGCAAAGAAAAACACATTAGATGACAATAAATGTTCAGGTACATAGTTTGGCAAGTACATTTCACCATGAAGAGTAGACAATGAAAACAGTGTTCACAGAATGCTTATTCAAATCAAGTCATTAAGAAGCACACTCACTCAAGGCATTTGACTGAGTGATGAAGGCCATTTGTGTCATCAGCATAATTCATTTATATAAGGTGGGTTGATAGACACTGAGGAAATCAAAAAATAATTAGTGGGGTTGAGGTGCTAGTTCCTCGTATGCTTCATTCAGATATCGCTCTTGGCAGGTCCTTTGTCATGGGAGAGGGGTCGCATCAAACTATTGTGATGACTCCTTTAAATGCAGTGAGCATGTAATCGTCTATGGGACAACTGAAAAAAGCTACCAAAAAAAACAGCAACACTGTTTggactcctctctttctttctctgttttaAATGGACAGGCTCCAGGTGGGATGTGTAGCATCCATCCTGCATTTCCAGGTTGGTTTTACAGCAAGTGATCGCTGTCCATCCAGTAAAGGCTTAACTGTGGCAgcaggaagagaaataagagtCCTTCTTCTGACCCAAGTCAACACCGG
>TU995221
CAGAAATCTAGTCTTTATTTTTTCAATTTACAACATGCTACAAAACAGTCCACACAATGAATGATCATATCAGCCGACTGACTCTCTGTGGACCTGTAATGGTGTTGGGACTATATACATGTTATAATATCTTCAAGGCATCAAATAGACGTGGGACTGCAAACAACCTCTTGCTTTGTGCCTGTGCCCCTTGCAATAACAGTCCTGTAAACCATTCATACAAATGAGCTGTGAATGTGAACTAGTCCTCTTTCTCAGGCACCAGGTCTGCGTCCTGGGGAGTGGCACCACTagaaggtgctgtgtgtgtgAACTAGTCCTCTTTCTCAGGCACCAGGTCTGCGTCCTGGGGAGTGGCACCACTagaaggtgctgtgtgtgtgtgtgtaaacaataACATGTTTGATGAAGTGTATGTACACTTGAATGGAGCCTTCTATACACAGCTAATGATGGATATGTGATTCATGCCTGTGGGCCCATTGATGCTGCTTACTTCTAGTACCCTACAGGCACAACTTCAGTGGGACTGAGATAAACCCTCAGAGGTTTCAGAATTCTCTTTCAATTATATTTGTACTCAAATGCAATAATAGCTCTAACTAAGCTACATTTTCACACACATTGGTAAAATCAAGTAAAAATCTGCCATTGGCTAGACTGTCTCAAAAGGTCAAAGGTTTCTTGAAAAGTGTAAACAGTAACAACACATTCACAGAAAATTGCAACTTGTGTGGAGTAACGACAATGGTCAGCCACGGTGATGAGGCGTCCGTAACATTGAAATAGTGACTTGGAGATTACATTGAACATTAGTTAACATAGCTGTATGTAGGGTTTCTttgagtgtatatacagtatatatatatatatatatatagataaataagccatttagcagacagttttatccaaagtgacttacagtaaggcgttcatatattttacatatgggtggcccAGGGAATCAAACCCTCAACCCTGGCGGTGTAagggccatgctctaccaactgactTACAGAGGACCACATAAGCTATATCTTGTACTTTTAGCCATGGCGACATAACTATCATATTACATTTACCCACAAGCTTTTTCCTGTGTTGGTGCAATCTTTCTAGTTGCATTCCATACTTTCAACTGTATCAGAATTTATGACGCAAAGAAAAACACATTAGATGACAATAAATGTTCAGGTACATAGTTTGGCAAGTACATTTCACCATGAAGAGTAGACAATGAAAACAGTGTTCACAGAATGCTTATTCAAATCAAGTCATTAAGAAGCACACTCACTCAAGGCATTTGACTGAGTGATGAAGGCCATTTGTGTCATCAGCATAATTCATTTATATAAGGTGGGTTGATAGACACTGAGGAAATCAAAAAATAATTAGTGGGGTTGAGGTGCTAGTTCCTCGTATGCTTCATTCAGATATCGCTCTTGGCAGGTCCTTTGTCATGGGAGAGGGGTCGCATCAAACTATTGTGATGACTCCTTTAAATGCAGTGAGCATGTAATCGTCTATGGGACAACTGAAAAAAGCTACCAAAAAAAACAGCAACACTGTTTggactcctctctttctttctctgttttaAATGGACAGGCTCCAGGTGGGATGTGTAGCATCCATCCTGCATTTCCAGGTTGGTTTTACAGCAAGTGATCGCTGTCCATCCAGTAAAGGCTTAACTGTGGCAgcaggaagagaaataagagtCCTTCTTCTGACCCAAGTCAACACCGG
>TU995222
CAGAAATCTAGTCTTTATTTTTTCAATTTACAACATGCTACAAAACAGTCCACACAATGAATGATCATATCAGCCGACTGACTCTCTGTGGACCTGTAATGGTGTTGGGACTATATACATGTTATAATATCTTCAAGGCATCAAATAGACGTGGGACTGCAAACAACCTCTTGCTTTGTGCCTGTGCCCCTTGCAATAACAGTCCTGTAAACCATTCATACAAATGAGCTGTGAATGTGAACTAGTCCTCTTTCTCAGGCACCAGGTCTGCGTCCTGGGGAGTGGCACCACTagaaggtgctgtgtgtgtgAACTAGTCCTCTTTCTCAGGCACCAGGTCTGCGTCCTGGGGAGTGGCACCACTagaaggtgctgtgtgtgtgAACTAGTCCTCTTTCTCAGGCACCAGTTCTGCATCCTGGGGAGTGGCACCACTagaaggtgctgtgtgtgtgtgtgtaaacaataACATGTTTGATGAAGTGTATGTACACTTGAATGGAGCCTTCTATACACAGCTAATGATGGATATGTGATTCATGCCTGTGGGCCCATTGATGCTGCTTACTTCTAGTACCCTACAGGCACAACTTCAGTGGGACTGAGATAAACCCTCAGAGGTTTCAGAATTCTCTTTCAATTATATTTGTACTCAAATGCAATAATAGCTCTAACTAAGCTACATTTTCACACACATTGGTAAAATCAAGTAAAAATCTGCCATTGGCTAGACTGTCTCAAAAGGTCAAAGGTTTCTTGAAAAGTGTAAACAGTAACAACACATTCACAGAAAATTGCAACTTGTGTGGAGTAACGACAATGGTCAGCCACGGTGATGAGGCGTCCGTAACATTGAAATAGTGACTTGGAGATTACATTGAACATTAGTTAACATAGCTGTATGTAGGGTTTCTttgagtgtatatacagtatatatatatatatatatatatatataaataagccatttagcagacagttttatccaaagtgacttacagtaaggcgttcatatattttacatatgggtggcccAGGGAATCAAACCCTCAACCCTGGCGGTGTAagggccatgctctaccaactgactTACAGAGGACCACATAAGCTATATCTTGTACTTTTAGCCATGGCGACATAACTATCATATTACATTTACCCACAAGCTTTTTCCTGTGTTGGTGCAATCTTTCTAGTTGCATTCCATACTTTCAACTGTATCAGAATTTATGACGCAAAGAAAAACACATTAGATGACAATAAATGTTCAGGTACATAGTTTGGCAAGTACATTTCACCATGAAGAGTAGACAATGAAAACAGTGTTCACAGAATGCTTATTCAAATCAAGTCATTAAGAAGCACACTCACTCAAGGCATTTGACTGAGTGATGAAGGCCATTTGTGTCATCAGCATAATTCATTTATATAAGGTGGGTTGATAGACACTGAGGAAATCAAAAAATAATTAGTGGGGTTGAGGTGCTAGTTCCTCGTATGCTTCATTCAGATATCGCTCTTGGCAGGTCCTTTGTCATGGGAGAGGGGTCGCATCAAACTATTGTGATGACTCCTTTAAATGCAGTGAGCATGTAATCGTCTATGGGACAACTGAAAAAAGCTACCAAAAAAAACAGCAACACTGTTTggactcctctctttctttctctgttttaAATGGACAGGCTCCAGGTGGGATGTGTAGCATCCATCCTGCATTTCCAGGTTGGTTTTACAGCAAGTGATCGCTGTCCATCCAGTAAAGGCTTAACTGTGGCAgcaggaagagaaataagagtCCTTCTTCTGACCCAAGTCAACACCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU995220 False 1792 lncRNA 0.40 2 28169421 28171284
TU995221 False 1752 lncRNA 0.41 3 28169421 28171284
TU995222 True 1826 lncRNA 0.41 2 28169421 28171284

Neighbor

gene id symbol gene type direction distance location
LOC110533597 LOC106603476 coding downstream 17134 28149090 ~ 28152287 (-)
LOC110533596 LOC106603475 coding downstream 39156 28128521 ~ 28130265 (-)
LOC110533595 pgk coding downstream 52025 28089899 ~ 28117396 (-)
LOC110533594 LOC105011118 coding downstream 103628 28010251 ~ 28065793 (-)
LOC110534912 LOC106603420 coding downstream 186751 27980733 ~ 27982670 (-)
LOC110533599 LOC106603477 coding upstream 350 28171634 ~ 28217129 (-)
LOC110533600 LOC106603481 coding upstream 190692 28361976 ~ 28379362 (-)
LOC110533602 NA coding upstream 217805 28388354 ~ 28399671 (-)
LOC110533605 LOC106603484 coding upstream 378179 28549463 ~ 28560015 (-)
LOC110533606 LOC106603485 coding upstream 408149 28579433 ~ 28624349 (-)
G874178 NA non-coding downstream 16488 28152530 ~ 28152933 (-)
G874167 NA non-coding downstream 46100 28123067 ~ 28123321 (-)
G874162 NA non-coding downstream 51525 28117682 ~ 28117896 (-)
G874107 NA non-coding downstream 80256 28088922 ~ 28089165 (-)
G874265 NA non-coding upstream 52095 28223379 ~ 28223586 (-)
G874277 NA non-coding upstream 63672 28234956 ~ 28235195 (-)
G874278 NA non-coding upstream 64123 28235407 ~ 28235703 (-)
G874592 NA non-coding upstream 131727 28303011 ~ 28306021 (-)
G874626 NA non-coding upstream 193301 28364585 ~ 28386099 (-)
G873784 LOC106573797 other downstream 585159 27582929 ~ 27584262 (-)
LOC110533580 tex14 other downstream 816175 27330589 ~ 27366556 (-)
G873209 orai2 other downstream 1004871 27162900 ~ 27164550 (-)
LOC110533569 LOC106567674 other downstream 1257795 26890009 ~ 26911668 (-)
G866654 NA other downstream 6345800 21819111 ~ 21823621 (-)
G874706 NA other upstream 368945 28540229 ~ 28543267 (-)
G875194 NA other upstream 769956 28941240 ~ 28985070 (-)
LOC110533621 NA other upstream 1744083 29906094 ~ 29922728 (-)
G878962 NA other upstream 3276198 31447482 ~ 31449163 (-)
G879440 LOC106603524 other upstream 4054148 32225432 ~ 32225936 (-)

Expression

G874237 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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G874237 Expression in each Bioproject

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G874237 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
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Co-expression Network