G874379 (LOC106603484)


Basic Information

Item Value
gene id G874379
gene name LOC106603484
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 28547597 ~ 28551650 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU995388
cagtgcagaaaatacacaagagttcaggggccttgctttaacaaagttaaccattttcactgtagtgtccaaaacgtatttcaagctgtcaggcattcctttggcagcaagagcctctcggtggatgctgcattGTACCCGAGTGGCGTCGGGAGCCACTGCTTGCACgcgcattaccactccactatgtctccctgtcttaGCTTTTGCACCATCtttacagataccaacacatcttgaccaccaaagtccatttgtgtcacaaagctgtccagtacttaaaaatatcctctcctgttgtcctgatttccagtggtttgcagaagaggatgtcttcctttaTTGAACCCCCATACCAGGAGCTGAcacataccaggagctgtgccaggcccgccacgtctgttgactcatccagctgtaatgcatagaattcactggcttggatgcaaagcagtaattatttcagaacatctcctgccatgtcactgatgcgttgtgaaacagtgttgtttgatgaagacctTGTCTCTATAGTTtttggggccttttcccccagcattgtcccagccatatctggGGCAGCAggaatgaagtcctccacaatagtatggggcttgcctgtcctagccactcggtagctcaccatttaagacgcttctagccccttcttattaatggtgtctgttgcttttatacatgtcttaatACTTAAAAGTaatcttaattctcgctcaaaaaaactcctgtggcttatttttaaaatggccatgttttgtttctaaatgtcttcgcaagagtgaaggtttaatcgagttgtgagatagtacttttgcacatataacacactgtggctactcccaatataagtgaacctcAAGTCAATGTAGATCTCATCTTATTTGTGCCTCTttgatggtccaacgtccctgtctgctgttcggtgctttcccgggtaagggggcagtagctcttcggctgcatcagattcacaactgtcattgtccatgctagctgggctaacaacaactGTAGAATTACTGAtactagcattggatgtgcttgtggaagcagaacaacttgtcgtcgacaggtgcaggtgtagtactgctggtagtagcagtactaccagtagagctggcaCGTGTCTCTATGGACGAGGGCCTTACTctttttaaccatttatcaatttttgagcaaacggaatgagcagcagctacgtttggctacatacggaccgttagtggaattcccgcgagagagtaatggttaatgtgattggatgttaattatttgactaggctacctgtatttgacattgtgttgttatttcgcttaACACTAGATGGTTATTTTACTTCTGACAGTgtaacgaggctactcaggcgataaaaaaactcacccaaatatATAGCCAAGTtgtaaaatataaatggactgtttgaaaatgtgaagaaaatatattttttgaatgtatttaaataaaatgcaaaacacatttttatttggcgtacccccgacagcATTGCCCCAGTTTGGGAATATCTGCTGTAGAATATACTTTTGGTAAAAAATATCTTAAATATCagcatctgtcacgccctgacctgggCGTGTGGGCGTgttattattttctatgtttggttaggtcagggtgcgactcgggtgggaaagtctatgttttctatttctttgtttttggccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcccaatcagaggcagctgtctatcgttgtctctgattggggatcacatataagttgtcattttccttttgggttttgtgggatcttgttttctgtttagtgtttctgcctgacagaactgtgcgctttcgtattcacgtttgttattttgtttgtgtgttttttgaaataaaataatcatgaacactttgcacgctgtgctttggtccactcctttcgaCGAGAGCCGTTACAGCATCAATGCTATGTTACACAGAACAACAAACTACCGTAATATATCAATAGAACCCAGGACAAACTGTGACATTGTCTGTATAGATTCAAACTGAAATACTTTTTACCTCTCAATAATAACATTATCTCATGGCCTCAAGtagttctctcattctctccctctcatctctctctctcctggcgtTGGGTACTGTATGTTCCCTATCTCTACATTTATATAAGCTCCTTGGGGACAGCACTTCAGCTTTGCACTGACAAGCTTCCTAATTTGTCCGAGCATCTCAAGGGTACTGCCAAGTAAGCCCAGGCCATCAAATACTCCATTAATTTCAGTGGATTATGTCATGTGATTGAATTGGGTTACATAACAGCTAATAACAAAGCGGTGGACCTTGGTGGTAACACTGTTCCTAATAGGCTTAACAGGGTAGTAAGGGAGGTCAGGATTGGATAGATTCCATTCCCCCTGCAAAAGCATTTCATAGctgaataaacttttttttttaatcaggaAAAGGAACAGAAATCCCATCTCTGCAATTGCTTGGTGCATGGTGATAGCTTTGTTTTTCTACCATGACAGATGCCATTTTCTGTGATGGTGTCTGCTATATGTACTGTAGCACCACCATGGCAATGCGAAGGAGAGCGTCTCCCAGCGACATCTAGCCTGATGAGTAGCTTGAGAGTAAGACAGAGGGATAatgacggagggagagaaagaaagaaatggaTTCACAATCACAATCTTGATAAAACACTTCCCTCGTGGACAGATAgcaaccacatacacacacacacacagacagacacacgcaggcacacacatacgcacacacgcaGTTGCTGTACACTGAGGAGCAACAATCCCCAGCTGGGGGTTATCAAATTGATATTCATAGTCCACTTCAGAACATCTTGAAGATATGACAGTAATGCTGAAGAAGAGCTTTTTCAATACAAAACAGGGTTTCCATTGCACATTGCAATGCTCCGAGCTGGGCGATAGTTACTTGGGCTGAATGCCCCAACATGTCTTTCTTGGTCCTTCACTGTACATACTATACATCAAGAGAAACAGCAACACAGAGCTACTGCAGGTCATTAAAGAGTTCCCCCTCTTTCAACCTGCAGTCATACAAAGAAAGGCTATGAAAATGTCTTTAGAAACTCGGCGAGGAGGAGAGGTCGCTAGGGGCCCAAGGTGTCATGGGCAACAGACAGTTCCAGGGAGCTATGGCAACAGCAGACTCATATAATAGCTAATCTGCATCAGGCTGCGACGCTGCAGAGAATAGAGAGATCAACACAACTACAGAGATATAGAGAATAgaaagaaatggagggagagagagagacagataatggagggaggatgagaggaagtCTGGGAAGAGAGACCATCTTTAGAAAGGGTGTCCCATCTCACTCTGTCAACACCTCTGGCTGCTGGGAGTCTGAAGGACatttctcctcctctatccccttcATCATTAGTCCAACTCTACAACCCAGATGCAACTCCTCAAACCCAACCCAACGCCTCTCCACCTCAACCAAGTGTCCTtagctccagtctgacccccaccTCCAGGAGGGTTAGTCAGGCCTACACGGCTGTGCTGCGACCCAGCAGAGGGAAGGCTGTGGGCAAGCCACAACTCTGCTCTAGCCCCCTGAGCCCCTGGAGCCCATGGATACTTCTCAGCCCTAGCTCTGGGTGTGTGTGAGTCCGGCCCTCGCGGGGCATGGTGACGGTGGCCTGGGCCTGCAGAGAGAGGGGCTCCGTGGGGAGGTTGTTGTGGTTGAGGTCCATTGTGGAGAGCAGGTGACCCAGGGAGTCCCAGCGTCGGGCGGTGGGCAGGCGGATCAAGGAGGAGTAGCCACGCTCAGAGAACACTGTGACAGGGGGAGTCTTGGAGGTCTCAGGCTCCTGCTGCTGCAGCCTGGAGGCCTGGGGGGTGAGCTTGGTGTAGGTGCCCCCCCGGCTGTCAGCCAGCACTTCACAGTAGGGAGGAGGGGGGTCCTCCATCAGAACAGCCTCCTCGTAGCAGGGGGGCTTCCCAAACA

Function

NR:

description
proline-rich protein 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU995388 True 4054 lncRNA 0.46 1 28547597 28551650

Neighbor

gene id symbol gene type direction distance location
LOC110533604 LOC106603483 coding upstream 4330 28419323 ~ 28543267 (+)
LOC110533603 LOC106603482 coding upstream 134675 28394195 ~ 28412922 (+)
LOC110533601 LOC106603421 coding upstream 158655 28379429 ~ 28388942 (+)
LOC110534879 LOC106603480 coding upstream 226408 28302914 ~ 28321189 (+)
LOC110533598 LOC106603479 coding upstream 376310 28162794 ~ 28171287 (+)
LOC110533607 LOC106603487 coding downstream 84144 28635794 ~ 28641714 (+)
LOC110533610 wwc1 coding downstream 96912 28648562 ~ 28693892 (+)
rars1 syrc coding downstream 147723 28699373 ~ 28729367 (+)
LOC118936921 NA coding downstream 679901 29231527 ~ 29240203 (+)
gemin5 LOC106603490 coding downstream 954623 29506273 ~ 29525563 (+)
G874431 NA non-coding upstream 22632 28523391 ~ 28524965 (+)
G874406 NA non-coding upstream 104703 28441897 ~ 28442894 (+)
G874286 NA non-coding upstream 302135 28245262 ~ 28245462 (+)
G874441 NA non-coding downstream 7640 28559290 ~ 28559759 (+)
G874453 NA non-coding downstream 25118 28576768 ~ 28577077 (+)
G874465 NA non-coding downstream 72965 28624615 ~ 28625319 (+)
G874466 NA non-coding downstream 73805 28625455 ~ 28625656 (+)
G874469 NA non-coding downstream 77604 28629254 ~ 28629510 (+)
G874108 pgk other upstream 430237 28089906 ~ 28117360 (+)
ppm1e ppm1e other upstream 1050725 27409651 ~ 27496872 (+)
ap2b1 ap2b1 other upstream 1278803 27177610 ~ 27268794 (+)
LOC110534876 LOC106603451 other upstream 1688494 26848371 ~ 26860066 (+)
G874438 LOC106603484 other downstream 4890 28556540 ~ 28557644 (+)
G874378 NA other downstream 25802 28577452 ~ 28584415 (+)
G874510 NA other downstream 176124 28727774 ~ 28738905 (+)
G874876 NA other downstream 278122 28829772 ~ 28830164 (+)
G875756 LOC106603491 other downstream 994989 29546639 ~ 29547275 (+)

Expression


Co-expression Network