G876601


Basic Information

Item Value
gene id G876601
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 30724212 ~ 30725822 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU997749
CATATTTATTGATTATGTCACTTTTACAAAAAAGGCATGGCATATACCACAATTGAACTGTTCTGAGGGATTGGAATGAAATCTTTAAATCAGATCACTATTGCTATAACTATATAACATTTCAACAAAGAACAAATGCGTAGGACATTATTGGAAAGGAAATTATTGCacaatatacatacagtatattttgaACAGATTTCATATGTCCACTCCTATGTTATTTTCGAAATTTACATCACACATTAAAACCCACTTACAGCACATCAAAATGACACCAAACACATGTAAATTTACTTTTGAAACACATCACACCTCGTCACATGAAAATAAATCCCCTTTACATATCCAACTTCGTATCAAAATAGCATCTGTATTTATTCTACATCTGGGATTACAAATGAAACGTTCCCTCACAAATGTCATGCAATTATCATAGAAATCACTTTTTTTAAGGCAATAGTAGGACAATAGTAGCAGCACCATAATAGTGACCATTGTAGAAAGGTTAGGTGGCATTGATTGtatacatatgtaggatcttaatttaatcctgcaAGGTTCTGTTATTGTATTTTAAGGCCAAGCTCACTAGCTTATTGATTGTAACAACTTGATTATAAGTATAATagatacaacataaatattctcAGGTTGTAGGCTATCCTTTTGATATAATATAAAATTGCCCAACTTCCTGAGCGgttatatagaatacagtattaaGAACAGTGCTTAAGTGTTGTGGTTCTTCTTGGGATTGCGGTACTTTGTATTTGTCATAGATATGCTTACTTTCACTCCACAAAACTTTATAAGTTTGCTTAATAAAATCTTTTTAAAAATAACAGAAAATGTATTCATCACAACAATTCTTAGGATAGAAAAAGTTCAAAGCTTCATTAAAAACCTAGCAGTGCCTCGAGTCACAGTGACTGTACTTTGCATAGTTAGTTGATCTTAGAACAACATATCAATAAGACATCTAAAAAAGTAcagagtgtataaaacattactcTCTAATTAGCAATGTGAAAGATATGATGTTCTTTTTAAGTGGTGTCATTGGGAAAACTATAAAGAATATTGTATATAGATCTAATATAATAAAGATGAACTGTAAAGAATGTAGAATATTGCTGGGGCTTACAACAAACTGAAGTAAACGATACACTGTAACTTTGTCCTATGTTTTTTTGATAGCACCAGCTGCTAAGGTCTCTCGTCTGGTAGTTACGAACGCCTGCTGCTTCTCATAATAAGCAGCTTCGTTAATAAAAGTGGGATAGACGGTGCCAGCACCTTCGTAGCGGAGGGTTGTCCCGTCAAACGTTTGGAACATAGGGTCACCAGGGTTCAACGGCTCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU997749 True 1367 lncRNA 0.34 2 30724212 30725822

Neighbor

gene id symbol gene type direction distance location
LOC110533637 LOC106603512 coding upstream 260234 30460900 ~ 30463978 (+)
LOC110533631 LOC106603505 coding upstream 524263 30081080 ~ 30199949 (+)
LOC110533629 LOC106603502 coding upstream 701922 30021091 ~ 30022290 (+)
LOC110533619 LOC106603497 coding upstream 741864 29919276 ~ 29986082 (+)
LOC110533623 NA coding upstream 823636 29889260 ~ 29917633 (+)
LOC110533640 LOC106603515 coding downstream 22617 30748439 ~ 30771331 (+)
LOC110533641 LOC106603516 coding downstream 45631 30771453 ~ 30950758 (+)
LOC118937065 NA coding downstream 184281 30910103 ~ 30910156 (+)
LOC110533644 LOC106603518 coding downstream 246871 30972693 ~ 31020075 (+)
LOC110533645 LOC106603519 coding downstream 296137 31021959 ~ 31124747 (+)
G876424 NA non-coding upstream 264840 30459150 ~ 30459372 (+)
G876410 NA non-coding upstream 289637 30434346 ~ 30434575 (+)
G876398 NA non-coding upstream 297296 30417673 ~ 30426916 (+)
G876361 NA non-coding upstream 334474 30369252 ~ 30389738 (+)
G876296 NA non-coding upstream 441100 30282887 ~ 30283112 (+)
G876813 NA non-coding downstream 355450 31081272 ~ 31081812 (+)
LOC110533646 LOC106603521 non-coding downstream 426031 31132784 ~ 31153474 (+)
G877782 NA non-coding downstream 451151 31176973 ~ 31177262 (+)
G877783 NA non-coding downstream 451624 31177446 ~ 31177676 (+)
G876079 ubb other upstream 674159 30020641 ~ 30050053 (+)
G875776 NA other upstream 1141682 29581126 ~ 29582530 (+)
G875756 LOC106603491 other upstream 1176937 29546639 ~ 29547275 (+)
G877809 NA other downstream 479261 31205083 ~ 31205418 (+)
LOC110534883 med13 other downstream 515988 31241426 ~ 31382578 (+)
LOC110533671 LOC106603546 other downstream 2256044 32981866 ~ 33045499 (+)
LOC110533672 LOC106603547 other downstream 2405323 33130843 ~ 33140211 (+)

Expression


Co-expression Network