G877787 (LOC100380853)


Basic Information

Item Value
gene id G877787
gene name LOC100380853
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 31185112 ~ 31185425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU999028
cggacggtgcgctgtctgtctgggaagtactggtggcccaccttggctcgggacatgagggtttatgtttcctcctgctcggtgtgcgcccagtataaggctcctagacacctgcccagaggtaagctacatcccttacccgttccacaacggccttggtcacacctgtcggttgaTTTTCTAacggatcttcctccctcacaggggaacaccacgatcttggttgttgtggatcgtttctctaagtcctgtcgtctcctccctctgcccggtctccctacggccctacaaactgcggaggccctgtttacaca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU999028 True 314 lncRNA 0.57 1 31185112 31185425

Neighbor

gene id symbol gene type direction distance location
LOC110533646 LOC106603521 coding upstream 31638 31132784 ~ 31153474 (+)
LOC110533645 LOC106603519 coding upstream 60365 31021959 ~ 31124747 (+)
LOC110533644 LOC106603518 coding upstream 165037 30972693 ~ 31020075 (+)
LOC110533641 LOC106603516 coding upstream 234354 30771453 ~ 30950758 (+)
LOC110534883 med13 coding downstream 56001 31241426 ~ 31382578 (+)
LOC110534886 ints2 coding downstream 200795 31386220 ~ 31452883 (+)
LOC110533651 LOC106603524 coding downstream 559164 31744589 ~ 32229047 (+)
LOC110533658 LOC106603532 coding downstream 1300583 32486008 ~ 32488013 (+)
LOC110533659 NA coding downstream 1308292 32493717 ~ 32497386 (+)
G877783 NA non-coding upstream 7436 31177446 ~ 31177676 (+)
G877782 NA non-coding upstream 7850 31176973 ~ 31177262 (+)
G876813 NA non-coding upstream 103300 31081272 ~ 31081812 (+)
G877793 NA non-coding downstream 7407 31192832 ~ 31193045 (+)
G877807 NA non-coding downstream 18567 31203992 ~ 31204242 (+)
G877894 NA non-coding downstream 122015 31307440 ~ 31326530 (+)
G877888 NA non-coding downstream 162469 31347894 ~ 31348422 (+)
LOC110533640 LOC106603515 other upstream 429456 30748439 ~ 30771331 (+)
G876079 ubb other upstream 1135059 30020641 ~ 30050053 (+)
LOC110533629 LOC106603502 other upstream 1162822 30021091 ~ 30022290 (+)
LOC110533619 LOC106603497 other upstream 1204482 29919276 ~ 29986082 (+)
G875776 NA other upstream 1602582 29581126 ~ 29582530 (+)
G877809 NA other downstream 19658 31205083 ~ 31205418 (+)
LOC110533671 LOC106603546 other downstream 1796441 32981866 ~ 33045499 (+)
LOC110533672 LOC106603547 other downstream 1945720 33130843 ~ 33140211 (+)
G880069 NA other downstream 2115340 33300765 ~ 33301738 (+)

Expression


Co-expression Network