G878551


Basic Information

Item Value
gene id G878551
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 32358192 ~ 32359101 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU999843
cagaaagttgtatggcaaccacctccggtgccaaatagaactggcagacatagacattcagtacaagaagaaaaagatggaaaatcttgcactggagttcgaaataaaaaagaggacaattaggaaactggaccttgaaataaaaaaacttgagagggagctccaagaagatgacacagctcaaaataaaaattaggtatattctcgtaaagtcaagtgagccatgacatatgagctcttattgtgagcacacaggacggtggcatctttctaaggttttttttattttcccagcaatcagtacaaccaagtcatcgttataaggcatcgccctcttttgcccaccccccccagcaccaggtgtggccactagcctatatgaaggcccaaaattttgtgttcctttctgctctgacaatggcatgcccattcgtgcgagatgtggtggatgaagaagcacttgtgctgaggagagccttcaggtgagaaagggtcttcagggaccggttggacccactggccttccctgatgaccatctacatgaaagatacaggttttctgcagatggcatcaggtatctatgcagactactgggtcccaggattaagcaccgcactgcacggagccatgcactgagtgtggagcaaatggtttgtgtggccttgcgcttttttgctagtggagccttcctgtactcagtgggggatgcagaacagctgaacaaggccacaatttgccgcacaataaggagtgtgtgtctggctatcaaagcattagcagatgtcttcatctccttccctggccacagaagactctgtgacatcaaagag

Function

NR:

description
PREDICTED: putative nuclease HARBI1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU999843 True 831 lncRNA 0.47 2 32358192 32359101

Neighbor

gene id symbol gene type direction distance location
LOC110533651 LOC106603524 coding upstream 129145 31744589 ~ 32229047 (+)
LOC110534886 ints2 coding upstream 905309 31386220 ~ 31452883 (+)
LOC110534883 med13 coding upstream 975614 31241426 ~ 31382578 (+)
LOC110533646 LOC106603521 coding upstream 1204718 31132784 ~ 31153474 (+)
LOC110533645 LOC106603519 coding upstream 1233445 31021959 ~ 31124747 (+)
LOC110533658 LOC106603532 coding downstream 126907 32486008 ~ 32488013 (+)
LOC110533659 NA coding downstream 134616 32493717 ~ 32497386 (+)
LOC110534887 LOC106603535 coding downstream 146268 32505369 ~ 32519387 (+)
LOC110533662 mog2a coding downstream 206789 32565890 ~ 32591366 (+)
LOC110533663 LOC106603538 coding downstream 240793 32599894 ~ 32635095 (+)
G878483 NA non-coding upstream 112064 32245821 ~ 32246128 (+)
G878479 NA non-coding upstream 116952 32240989 ~ 32241240 (+)
G878378 NA non-coding upstream 243040 32107231 ~ 32115152 (+)
G878376 NA non-coding upstream 245462 32104393 ~ 32112730 (+)
G878375 NA non-coding upstream 246118 32104107 ~ 32112074 (+)
G878559 NA non-coding downstream 19221 32378322 ~ 32378955 (+)
G878669 NA non-coding downstream 183091 32542192 ~ 32542721 (+)
G878720 NA non-coding downstream 423355 32782456 ~ 32782831 (+)
G878792 NA non-coding downstream 429088 32788189 ~ 32788420 (+)
G879788 NA non-coding downstream 457848 32816949 ~ 32817180 (+)
G877809 NA other upstream 1152774 31205083 ~ 31205418 (+)
LOC110533640 LOC106603515 other upstream 1602536 30748439 ~ 30771331 (+)
G876079 ubb other upstream 2308139 30020641 ~ 30050053 (+)
LOC110533671 LOC106603546 other downstream 622765 32981866 ~ 33045499 (+)
LOC110533672 LOC106603547 other downstream 772044 33130843 ~ 33140211 (+)
G880069 NA other downstream 941664 33300765 ~ 33301738 (+)
LOC110533688 NA other downstream 1685393 34044472 ~ 34047724 (+)
hsd20b2 LOC106603577 other downstream 2075441 34422538 ~ 34435620 (+)

Expression


Co-expression Network