G879615 (LOC106603538)


Basic Information

Item Value
gene id G879615
gene name LOC106603538
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 32630347 ~ 32632526 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1000995
GTGAGACAGTCAGTAGGGTCTTGGAGAGGGTTTTACTTACCGATGGTGGTGATGGGTTTGTTGTAAGGCACCATTCCCCAGGAATCGGAGGAGAAGAAGCCACAGCCATGGAACAGACAGGGCGCAAAACCAATAATCTTCTGCAGTCGCTTTTGAGCCAGCCGCCACCAGGTTCTCTCCTCGAAGATCACCTGTTTGTACACATCGTTCTCCCCAAAGGAGTAGACTGGTACCAGGTCagacctgacagagagagggggtttaCAATAGTCTCCTGAAGTTGCTCATAAGGCATAACAGATATCTGATCACCAAATGATGGGCTACTAAACCATGTGGTTTATAACAGCTCACCTACACCAGTTTACCCAGACTTTGTTTTCAgtagctcagttggtaaagcatgacgcttgcaacaccaggatagtgggttcgattcatGACTAAGTCACTTGGGAtaaatgaaacatggtgaagccccaaaattgccctcgatAGAAGCctatgtttcagacataaggaagtggatggctgcaaactttctacttttaaactcggacaaaacaaagatgcttgttctaggtcccaagaaacaaagagatcttctgttgaatctgacaattaatcttaatggttgtacagtcgtctcaaataaaactgtgaaggacctcagcgttatctctcttttgacgaacatatcaagactgtttcaaggacagcttttttccatctacgtaacattgcaaaaatcagaaaccttctgtccaaaaatgatgcagaaaacttaatccatgcttttgttatttctaggttagactactgcaatgctctacttcctGTCAAGgccagggctgatttcaaggtcttactgctaacctacaaagcattacatgggcttgctcctacctatctctctgatttggtcctgcagtacatacctacacgtacgctacggtcacaagacgcaggcctcctaattgtcgctagaatttctaagcaaacagtggaggcagggctttctcctatagagctccatttttatggaatggcctgcttacccatgtgagagacgcagactcggtctcaacctttaagtctttattgaagactcatctcttcagagggtcatatgattgagtgtagtctggctctggagcaacgaaccgcccttgctgtctctgcctggctggttcccctctttccactgggattctctacctctaaccctattacaggggctgagtcactggcttactggtgctctttcatgccgtccctaggaggggtgcgtcacttaagtgggttgagtcactgatgtgatcttcctgtctgggttggcgcccccccttgggtttttccgtggcggagatctttgtgggctatactcggccttgtctcaggatggtaagttggtggttgaagatatccctctagtggtgtgggggctatgctttgacaaagtgggtgaggttatatccttcctgtttggccctgtccgggggtatcatcggatggggccacagtgtctcctgacccctcctgtctcagcctccagtatttatgctgcagtagtttgtgtcggggggctagggtcagtttgttatatctggagtaattctcctgtcctatccggtgtcctctgtgaatttaagtatgctctctctaattctctctttctctctctctctctctgaggacctgagccctaggcccatgcctcaggactacctggcatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgcctgtgattattattatttgaccatgctggtcatttatgaacatttgaacatcttggcaatgttctgttataatctccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctgtataaataaatttgatttgataaagtgTCTGATAAATGGCAtacaatacactgaacaaaaatataaatgcaacaatttcaaaga

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1000995 True 2152 lncRNA 0.47 2 32630347 32632526
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110533661 LOC106603536 coding downstream 72955 32524426 ~ 32557392 (-)
LOC110533656 LOC106603531 coding downstream 133608 32488327 ~ 32496739 (-)
LOC110533657 LOC106567954 coding downstream 144786 32462559 ~ 32485561 (-)
LOC110533655 LOC106603528 coding downstream 182857 32432886 ~ 32447490 (-)
LOC110533654 LOC106603527 coding downstream 207467 32368686 ~ 32422880 (-)
LOC110533665 LOC106603540 coding upstream 243713 32876239 ~ 32911266 (-)
LOC110533666 LOC106603541 coding upstream 301205 32933731 ~ 32952352 (-)
LOC110533667 LOC106603542 coding upstream 328141 32960667 ~ 32967754 (-)
LOC110533668 LOC106603543 coding upstream 340891 32973417 ~ 32977176 (-)
LOC110533669 LOC106603544 coding upstream 351182 32983708 ~ 32992688 (-)
G879623 NA non-coding downstream 20780 32605651 ~ 32609567 (-)
G879622 NA non-coding downstream 27728 32601833 ~ 32602619 (-)
G879619 NA non-coding downstream 34658 32591465 ~ 32595689 (-)
G879580 NA non-coding downstream 107886 32522239 ~ 32522461 (-)
G879557 NA non-coding downstream 178230 32448953 ~ 32452117 (-)
G879636 NA non-coding upstream 914 32633440 ~ 32654345 (-)
G879753 NA non-coding upstream 148180 32780706 ~ 32781106 (-)
G879754 NA non-coding upstream 148632 32781158 ~ 32781366 (-)
G879755 NA non-coding upstream 149241 32781767 ~ 32782136 (-)
G879756 NA non-coding upstream 149876 32782402 ~ 32782624 (-)
G879617 NA other downstream 41509 32585891 ~ 32588838 (-)
LOC110533652 LOC106603525 other downstream 381134 32246991 ~ 32353202 (-)
G879440 LOC106603524 other downstream 404411 32225432 ~ 32225936 (-)
G878962 NA other downstream 1181184 31447482 ~ 31449163 (-)
LOC110533621 NA other downstream 2713842 29906094 ~ 29922728 (-)
G879763 NA other upstream 157841 32790367 ~ 32790802 (-)
G880718 LOC106603546 other upstream 403637 33036163 ~ 33037883 (-)
LOC110533673 NA other upstream 521444 33153970 ~ 33251521 (-)
G880807 NA other upstream 530386 33162912 ~ 33165022 (-)
G880994 NA other upstream 980799 33613325 ~ 33678839 (-)

Expression

G879615(LOC106603538) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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G879615(LOC106603538) Expression in each Bioproject

Bar chart with 20 bars.
G879615(LOC106603538) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network