XLOC_002788


Basic Information

Item Value
gene id XLOC_002788
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 25380998 ~ 25390673 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006050
CATGGACGAGACATCACCGGGATTATAGAGGTCTGCTGATGAGAAGCTCTGTGGCCCGTTTGACCATTGAACTGCACTCACTCTTGTCGAAAGCGGTGGCGTCGACTGGACTGGGATGAGACTGAGGTAACAGCTTGTGTGAATTGGACTGTGCAGTGTTTTCCATTGAGGATCTGACGGGTGTTTGGTCTCCGGAGCCGGAGGAGTGTGTGGGGTCTGGGTACAGGAGGGCAGACAGCGGGCAGTCTGGAGAGGAATATTTGGCCAGCACCTGCAGCTGCTCTGGTCTGAGGGCCGCTTCGGCACACACCTGCTCGTACAGGCCCGAGTAACTCTGCCAGGCCTTCAGCTTCAACTGATTCAGCTTGACTCTTTCAGAGGTCAGCTTCTCTCGCTCACATCGctg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006050 True 406 lncRNA 0.56 2 25380998 25390673

Neighbor

gene id symbol gene type direction distance location
XLOC_002787 tmem135 coding downstream 37477 25312337 ~ 25343521 (-)
XLOC_002786 kpna7 coding downstream 163651 25214270 ~ 25217347 (-)
XLOC_002785 fat3b coding downstream 176964 25108853 ~ 25204034 (-)
XLOC_002784 mtnr1bb coding downstream 311791 25035459 ~ 25069207 (-)
XLOC_002783 cd209 coding downstream 352471 24971473 ~ 25028527 (-)
XLOC_002789 grik1a coding upstream 11790 25402463 ~ 25570647 (-)
XLOC_002790 NA coding upstream 103500 25494173 ~ 25499474 (-)
XLOC_002791 tiam1a coding upstream 181699 25572372 ~ 25657506 (-)
XLOC_002792 NA coding upstream 296228 25686901 ~ 25687218 (-)
XLOC_002793 NA coding upstream 300199 25690872 ~ 25691670 (-)
XLOC_002779 NA non-coding downstream 528473 24833696 ~ 24852525 (-)
XLOC_002772 NA non-coding downstream 753560 24613973 ~ 24627438 (-)
XLOC_002771 AL929315.2 non-coding downstream 925266 24455616 ~ 24455732 (-)
XLOC_002770 AL929315.1 non-coding downstream 935006 24439620 ~ 24445992 (-)
XLOC_002768 CU467963.2 non-coding downstream 997617 24383266 ~ 24383381 (-)
XLOC_002802 NA non-coding upstream 1050379 26441052 ~ 26447171 (-)
XLOC_002807 NA non-coding upstream 1446163 26836836 ~ 26872413 (-)

Expression


Co-expression Network