G879832


Basic Information

Item Value
gene id G879832
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 32876245 ~ 32902669 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1001227
TGGACTCCATTTAATCACATCTGTTATAATTCCATGTTGCACAATCACAAATAATAATGAGGAAGGTACAAGGCATGAAGTAATGGCAAGTAACAGGGGAGGCTAGCATTTTTTGgtgggtatgatatttgtgcatctgtaactttctcactcatcattattgacGATTCATTTCAGGACTATCCGCAATCATgctagcatccacattaatgtacatgcttagaagtgtttagaaacatatgctattcttatttacaatgtaaaTTATTCCAaagtgacacaatacattatttactattaatttctattgggcacaaaataaacagcaaatgcatccaacaaatttgtagtGTCACAAGCTTGATGCAATCATTGCGTGttagtcaaaaggttggacacacctagtcattcaagggtttttctttattttttactattttctacattgtagaatagtagtgaagacgtcaaaactatgaaataacacatttggaatcatgtagtaaccaaaaagtcttaaacaaatattttatatttcagacaCTTCAATGTATTCACCCCTTGCCTTGTTGATAGCTTTGCTGTAATTCCTAAACGGTTGACCCGATATGGATGCAAATAACctgaaattaaagctgacagtctgcactttaacctcatcgCCGTATAATTTCAAATCTAAAGTGCTGTAGTACAGAGCCAAAAGAAGACTAAATGCTTCACTGTGCCAATAATTACAGAGGGCTCTGTATGTTCTCATTCTAGCAGCCTGTGCACTCACTACCTGCTAATATTTTTGAGAAAACCAtcacaaaaatacaaaacaagtCCTGTGAACTTGGTATCTTATTTCCTTATCAAAATATGAATTCTTTAGAACATGTTGATCATGTTTAGCTTTGTGTAGAAGTGTAATTTTGATAACATCACCTTTATCAACAATAACAAAggaaatttttattttatttaactaggcaagtcagttaagaacaaattcttattttctatgacagcctaggaacagtgggttaactgcctgttcaggggtagaacgacagatttgtaacttgtcagctggggggtttgaacttgcaaccttccagctgctagtccaacgctctaaccactaggctaccctgccatgtCTCCCATTGTAACGTTTCCTAGAAACAGCAGAAGTTGTCCAACTTGCTGTCGGTGCATTTGAACCTCCCCTGACTTTACTGTCAACTTCCGTTTACAGTCGGCTACTTTCGCCTTACCACTCAAACACGCCAGTGTATCTGGAATCCACTCCGCTGTACATTTCTCATAATTCCTAAAAATAGAAAGACTTTAATCAGTTAAAACATGCCTATCAACCAATTTGTTAGCAGCTATTGACCGCTGCAAACACAAACCGAGCTCATAAAAGGCCTCCAAAAAGCTCATGTAACAATGATTGCGTTCTATTAAACATACTTCCCCTGCTGTTCTATATTGCTGTAGCTGTGTTGGCAGCATCTGTGCCCCCATGGGCAGGCTAGGTCAATAGTGGTACATGTGCAGGTTGGAGCCTCAATGTGTCAGAGCACAGCATTGGCCAAGATGCTTAGCTTCAAGCCCTCACTAGCTATTTGTGTCTGTTAAGAATTATGAGAACCACAAGGCAACACAACGTTTGGTCAGAGGGTAATACTTCCCTTTAGTAACAACCTAACCCTTTGTATTCAAATAAATtagatttattttgttttttaattagAGGTTTAACCACTTCCAAGATCTCACCTAATTCATATGAGCGTTAGGCTAAACCTGTGATAGAATTAAAGCTTTCTTACAATGGTCTTTGTGACAGTGAGGAATGTCCAAACAAACAGTATCCCAGGTATTTTGTAATTGAGAGGTTGATCACAATTGGCCTTGAGATGAAACACTACAACACATCACAAGTGTGTTCATTTATCATAGGTTCACAGATGATTGTGTGAAATATTTATTTTCTTAACACTTGGAGATTAAAACAGTAATGCTTCGAGGGGAATAAATATAGCTAGTCTATTCCAAAAACATCAACTTGTGAGATTATGTAGTTCTCTTGACAAGTTTTTTCTAAATGACCAACAAGTTTTTCAccacgatgatgatgatgatgctgataaTGTGCGGTCTTGGGAAATTTTTTACGAGCTTGGTAAAGATTCTTTAATTAGTTTATAaatatttaattatttaattcAGCATACAAAAAGACAGTATGTACATCCACTCAAGAGTGGTTCATAATAACACAGGATTATATGAGACCGATGTGTTCTGTTCACATGCTCTGAGCGTTAGGCTTTGGACTACCTGCATGTCAGACATTATAGGGATGATGTGCTGTTTCTACCACTGGGAGTTCTTTTTCCTTTTTCTGAGGATGCACACAGAACTTTCTGTCTGCAGGCGAGTCCCCATTCGAGTTCAAGTGTCCACAGTTCAACATCAGTTACTGAAAGTACTTGAAGTTCCCTTTGTGTGTTTTGTACccttttcctctctttctttgcGTGTCTTTCTCTCTTGAAAAAACAAGTATCATTTGAGCAATAAAAAATATGGATCCTTCAGAACCCTTTGAACTCCGTGGAAACGGTGAACGTCAACATCAGAGCGTGACCAGAagtacaaaaaaacaaacatccaATATCATTTATTTTAATAAAGGTATATGAAAATAGACTTTTGATATCCAAGTATAGCAAGTGTAAGGAAAGTGTAAGGAAAGAAAAAACCCTTGAGGACGGTGGTCTTCACGTAAACCGATAGGCATTGTCACAACACCCATTTGTCCACGTTCGTAAAAATGTTTAACTTTTTAGTCCAGCTTGTGGGTCAGAGTTTAATAAAGAATTATGAACAAAAATAAACTGTTTCTTGTCAAAATATACATGCTAAAGCTTAAGACAAAAGTAAGCCATCTTGGAAACGTAGTGCTTTGGTTATCTGTGGCCCCAGCCCAGAGACTGGATGGATGAAGTAGACAACATGGACTCATTTGCAGACGTATCTCTCCACAATCCTCTCACACTTCTTACATGTGACATAGCAGCACCAGTGGTACTTGCAGTGGCAGCGTTCCACCAGCTTCTCTGTGTAGGGGTTGTAGCCTCGCCCACAGCACATCAGGTCGCAGCTGTCGCTGCCGATGGACGTCTTGTTGCA
>TU1001228
TGGACTCCATTTAATCACATCTGTTATAATTCCATGTTGCACAATCACAAATAATAATGAGGAAGGTACAAGGCATGAAGTAATGGCAAGTAACAGGGGAGGCTAGCATTTTTTGgtgggtatgatatttgtgcatctgtaactttctcactcatcattattgacGATTCATTTCAGGACTATCCGCAATCATgctagcatccacattaatgtacatgcttagaagtgtttagaaacatatgctattcttatttacaatgtaaaTTATTCCAaagtgacacaatacattatttactattaatttctattgggcacaaaataaacagcaaatgcatccaacaaatttgtagtGTCACAAGCTTGATGCAATCATTGCGTGttagtcaaaaggttggacacacctagtcattcaagggtttttctttattttttactattttctacattgtagaatagtagtgaagacgtcaaaactatgaaataacacatttggaatcatgtagtaaccaaaaagtcttaaacaaatattttatatttcagacaCTTCAATGTATTCACCCCTTGCCTTGTTGATAGCTTTGCTGTAATTCCTAAACGGTTGACCCGATATGGATGCAAATAACctgaaattaaagctgacagtctgcactttaacctcatcgCCGTATAATTTCAAATCTAAAGTGCTGTAGTACAGAGCCAAAAGAAGACTAAATGCTTCACTGTGCCAATAATTACAGAGGGCTCTGTATGTTCTCATTCTAGCAGCCTGTGCACTCACTACCTGCTAATATTTTTGAGAAAACCAtcacaaaaatacaaaacaagtCCTGTGAACTTGGTATCTTATTTCCTTATCAAAATATGAATTCTTTAGAACATGTTGATCATGTTTAGCTTTGTGTAGAAGTGTAATTTTGATAACATCACCTTTATCAACAATAACAAAggaaatttttattttactaggcaagtcagttaagaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1001227 False 3189 lncRNA 0.38 2 32876245 32879454
TU1001228 True 986 lncRNA 0.34 3 32876245 32902669

Neighbor

gene id symbol gene type direction distance location
LOC110533664 LOC106603537 coding upstream 96313 32639570 ~ 32779932 (+)
LOC110533663 LOC106603538 coding upstream 241150 32599894 ~ 32635095 (+)
LOC110533662 mog2a coding upstream 284879 32565890 ~ 32591366 (+)
LOC110534887 LOC106603535 coding upstream 356858 32505369 ~ 32519387 (+)
LOC110533659 NA coding upstream 378859 32493717 ~ 32497386 (+)
LOC110533671 LOC106603546 coding downstream 106718 32981866 ~ 33045499 (+)
LOC110534913 LOC106603425 coding downstream 158742 33061411 ~ 33063183 (+)
LOC110533672 LOC106603547 coding downstream 228174 33130843 ~ 33140211 (+)
samsn1b LOC106603553 coding downstream 565695 33468364 ~ 33492333 (+)
serpinh1a serph coding downstream 650639 33553308 ~ 33557914 (+)
G879788 NA non-coding upstream 59065 32816949 ~ 32817180 (+)
G878792 NA non-coding upstream 87825 32788189 ~ 32788420 (+)
G878720 NA non-coding upstream 93414 32782456 ~ 32782831 (+)
G878669 NA non-coding upstream 333524 32542192 ~ 32542721 (+)
G878559 NA non-coding upstream 497290 32378322 ~ 32378955 (+)
G879846 LOC106603541 non-coding downstream 31527 32934196 ~ 32936615 (+)
G879877 NA non-coding downstream 43776 32946445 ~ 32946665 (+)
G879879 NA non-coding downstream 49370 32952039 ~ 32952309 (+)
G879853 NA non-coding downstream 58206 32960875 ~ 32962613 (+)
G879844 LOC106603544 non-coding downstream 80976 32983645 ~ 32990813 (+)
LOC110534883 med13 other upstream 1553645 31241426 ~ 31382578 (+)
G877809 NA other upstream 1670827 31205083 ~ 31205418 (+)
LOC110533640 LOC106603515 other upstream 2120589 30748439 ~ 30771331 (+)
G876079 ubb other upstream 2826192 30020641 ~ 30050053 (+)
G880069 NA other downstream 398096 33300765 ~ 33301738 (+)
LOC110533688 NA other downstream 1141825 34044472 ~ 34047724 (+)
hsd20b2 LOC106603577 other downstream 1531873 34422538 ~ 34435620 (+)

Expression


Co-expression Network