G879879


Basic Information

Item Value
gene id G879879
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 32952039 ~ 32952309 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1001282
AGGGAATCTGAAAAAGGGGACGTCTGATTTATCTGTGTAGATATTACAATTTGGTGCGGCACAGCGCTTGGGCATTTTGGGATCCATGCACTCACTGGTCGTTCAGAAGTCGTGCATCGTGAAATTAATCAGAAATCCACCCGTTTTTAATCTTTAGCTCAATATTAGCACAACGTCTTGAAATTAACTTTGTAGCTAAGTTCATTATTTAATTCCGGAAAAAGTTAATTTGTTGCGTGGTGTAGTTAGTTGCCTGTGTGTTCATAAATCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106603541 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1001282 True 271 lncRNA 0.39 1 32952039 32952309

Neighbor

gene id symbol gene type direction distance location
LOC110533664 LOC106603537 coding upstream 172107 32639570 ~ 32779932 (+)
LOC110533663 LOC106603538 coding upstream 316944 32599894 ~ 32635095 (+)
LOC110533662 mog2a coding upstream 360673 32565890 ~ 32591366 (+)
LOC110534887 LOC106603535 coding upstream 432652 32505369 ~ 32519387 (+)
LOC110533659 NA coding upstream 454653 32493717 ~ 32497386 (+)
LOC110533671 LOC106603546 coding downstream 57078 32981866 ~ 33045499 (+)
LOC110534913 LOC106603425 coding downstream 109102 33061411 ~ 33063183 (+)
LOC110533672 LOC106603547 coding downstream 178534 33130843 ~ 33140211 (+)
samsn1b LOC106603553 coding downstream 516055 33468364 ~ 33492333 (+)
serpinh1a serph coding downstream 600999 33553308 ~ 33557914 (+)
G879877 NA non-coding upstream 5374 32946445 ~ 32946665 (+)
G879846 LOC106603541 non-coding upstream 15424 32934196 ~ 32936615 (+)
G879832 NA non-coding upstream 49370 32876245 ~ 32902669 (+)
G879788 NA non-coding upstream 134859 32816949 ~ 32817180 (+)
G878792 NA non-coding upstream 163619 32788189 ~ 32788420 (+)
G879853 NA non-coding downstream 8566 32960875 ~ 32962613 (+)
G879844 LOC106603544 non-coding downstream 31336 32983645 ~ 32990813 (+)
G879914 NA non-coding downstream 100508 33052817 ~ 33053058 (+)
G880032 NA non-coding downstream 302366 33254675 ~ 33255017 (+)
LOC110534883 med13 other upstream 1629439 31241426 ~ 31382578 (+)
G877809 NA other upstream 1746621 31205083 ~ 31205418 (+)
LOC110533640 LOC106603515 other upstream 2196383 30748439 ~ 30771331 (+)
G876079 ubb other upstream 2901986 30020641 ~ 30050053 (+)
G880069 NA other downstream 348456 33300765 ~ 33301738 (+)
LOC110533688 NA other downstream 1092185 34044472 ~ 34047724 (+)
hsd20b2 LOC106603577 other downstream 1482233 34422538 ~ 34435620 (+)

Expression


Co-expression Network