G880080


Basic Information

Item Value
gene id G880080
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33323972 ~ 33324235 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1001494
actccacagagctgggctttatggaagagtggctagAAAAAAGCccttgcttaaagaaaaaaataagcaaacacatttggtgttcgccaaatggcatgtgggagactccccaaacatatggaagaaggtgctctggtcagatgagactcaaattgagctttttggccatcaaggaaaacgctatgactggcacaaacccaacatcatccccacagtgaagcatggtggtggcagcatcatgttgtggggatatttttcatcggc

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1001494 True 264 lncRNA 0.46 1 33323972 33324235

Neighbor

gene id symbol gene type direction distance location
LOC110533672 LOC106603547 coding upstream 183761 33130843 ~ 33140211 (+)
LOC110534913 LOC106603425 coding upstream 260789 33061411 ~ 33063183 (+)
LOC110533671 LOC106603546 coding upstream 282958 32981866 ~ 33045499 (+)
LOC110533664 LOC106603537 coding upstream 544040 32639570 ~ 32779932 (+)
LOC110533663 LOC106603538 coding upstream 688877 32599894 ~ 32635095 (+)
samsn1b LOC106603553 coding downstream 144129 33468364 ~ 33492333 (+)
serpinh1a serph coding downstream 229073 33553308 ~ 33557914 (+)
LOC110533682 NA coding downstream 244202 33568437 ~ 33569230 (+)
acer3 LOC106603557 coding downstream 251174 33575409 ~ 33593092 (+)
LOC100136017 mmp13 coding downstream 292149 33616384 ~ 33621122 (+)
G880068 LOC106603551 non-coding upstream 25740 33297214 ~ 33298232 (+)
G880032 NA non-coding upstream 68955 33254675 ~ 33255017 (+)
G879914 NA non-coding upstream 270914 33052817 ~ 33053058 (+)
G879844 LOC106603544 non-coding upstream 333159 32983645 ~ 32990813 (+)
G880091 NA non-coding downstream 25345 33349580 ~ 33349805 (+)
G880092 NA non-coding downstream 25579 33349814 ~ 33350044 (+)
G880093 NA non-coding downstream 25971 33350206 ~ 33350501 (+)
G880094 NA non-coding downstream 26445 33350680 ~ 33350990 (+)
G880095 NA non-coding downstream 26765 33351000 ~ 33351286 (+)
G880069 NA other upstream 22234 33300765 ~ 33301738 (+)
LOC110534883 med13 other upstream 2001372 31241426 ~ 31382578 (+)
G877809 NA other upstream 2118554 31205083 ~ 31205418 (+)
LOC110533688 NA other downstream 720259 34044472 ~ 34047724 (+)
hsd20b2 LOC106603577 other downstream 1110307 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 1113105 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 1134559 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 1162585 34486712 ~ 34488757 (+)

Expression


Co-expression Network