G880101


Basic Information

Item Value
gene id G880101
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33357151 ~ 33357490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1001515
TCCATAATATCCTTGGCTTGTATCCTAAAcagcttcactctctctctctctgtgtgtatgagtCAGCAGGATGGATCTTTATTGGGTTAAAGGAGTAGTCTGCTGATTATAGGATGAGTAATTCTGGGATGCTTTGTGAATAAGATGGCCAACTTGGGACAGAGGACTAAGTGACAGAAAAAGAGGGGACATCTCTGCCTACTCGCCAATCATTTTACCATTCATAATGCCTCCATTGACCTACTTCATCAGGAGTTTTTAAATCATTCTAATGCTTCTGCCCACAGTGAGCTCTGAAAAAGGCATGTGCGGGGAACGATTTGGGTACAATGTGCTATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1001515 True 340 lncRNA 0.43 1 33357151 33357490

Neighbor

gene id symbol gene type direction distance location
LOC110533672 LOC106603547 coding upstream 216940 33130843 ~ 33140211 (+)
LOC110534913 LOC106603425 coding upstream 293968 33061411 ~ 33063183 (+)
LOC110533671 LOC106603546 coding upstream 316137 32981866 ~ 33045499 (+)
LOC110533664 LOC106603537 coding upstream 577219 32639570 ~ 32779932 (+)
LOC110533663 LOC106603538 coding upstream 722056 32599894 ~ 32635095 (+)
samsn1b LOC106603553 coding downstream 110874 33468364 ~ 33492333 (+)
serpinh1a serph coding downstream 195818 33553308 ~ 33557914 (+)
LOC110533682 NA coding downstream 210947 33568437 ~ 33569230 (+)
acer3 LOC106603557 coding downstream 217919 33575409 ~ 33593092 (+)
LOC100136017 mmp13 coding downstream 258894 33616384 ~ 33621122 (+)
G880100 NA non-coding upstream 212 33356530 ~ 33356939 (+)
G880095 NA non-coding upstream 5865 33351000 ~ 33351286 (+)
G880094 NA non-coding upstream 6161 33350680 ~ 33350990 (+)
G880093 NA non-coding upstream 6650 33350206 ~ 33350501 (+)
G880092 NA non-coding upstream 7107 33349814 ~ 33350044 (+)
G880104 NA non-coding downstream 2647 33360137 ~ 33360661 (+)
G880105 NA non-coding downstream 3363 33360853 ~ 33361192 (+)
G880107 NA non-coding downstream 5286 33362776 ~ 33362998 (+)
G880108 NA non-coding downstream 6005 33363495 ~ 33363696 (+)
G880109 NA non-coding downstream 6378 33363868 ~ 33364085 (+)
G880069 NA other upstream 55413 33300765 ~ 33301738 (+)
LOC110534883 med13 other upstream 2034551 31241426 ~ 31382578 (+)
G877809 NA other upstream 2151733 31205083 ~ 31205418 (+)
LOC110533688 NA other downstream 687004 34044472 ~ 34047724 (+)
hsd20b2 LOC106603577 other downstream 1077052 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 1079850 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 1101304 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 1129330 34486712 ~ 34488757 (+)

Expression


Co-expression Network