G880108


Basic Information

Item Value
gene id G880108
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33363495 ~ 33363696 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1001522
CTTACTTTCCTATCCCTCCCTCACCTGATTTATCACACTAACatggctctgtctgtgtgtgtggctggcaaCAACAACAGTTGGATAAGTAGTCATCCAAGAATCTCTGGGCTCCGAGAGAAAAATACACTAATTACAGCCCTTAAAACGCCCCGTGACCAACAAGGTTCACACCTGGGTCTCCTGTAGTGTATGCCAGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1001522 True 202 lncRNA 0.47 1 33363495 33363696

Neighbor

gene id symbol gene type direction distance location
LOC110533672 LOC106603547 coding upstream 223284 33130843 ~ 33140211 (+)
LOC110534913 LOC106603425 coding upstream 300312 33061411 ~ 33063183 (+)
LOC110533671 LOC106603546 coding upstream 322481 32981866 ~ 33045499 (+)
LOC110533664 LOC106603537 coding upstream 583563 32639570 ~ 32779932 (+)
LOC110533663 LOC106603538 coding upstream 728400 32599894 ~ 32635095 (+)
samsn1b LOC106603553 coding downstream 104668 33468364 ~ 33492333 (+)
serpinh1a serph coding downstream 189612 33553308 ~ 33557914 (+)
LOC110533682 NA coding downstream 204741 33568437 ~ 33569230 (+)
acer3 LOC106603557 coding downstream 211713 33575409 ~ 33593092 (+)
LOC100136017 mmp13 coding downstream 252688 33616384 ~ 33621122 (+)
G880107 NA non-coding upstream 497 33362776 ~ 33362998 (+)
G880105 NA non-coding upstream 2303 33360853 ~ 33361192 (+)
G880104 NA non-coding upstream 2834 33360137 ~ 33360661 (+)
G880101 NA non-coding upstream 6005 33357151 ~ 33357490 (+)
G880100 NA non-coding upstream 6556 33356530 ~ 33356939 (+)
G880109 NA non-coding downstream 172 33363868 ~ 33364085 (+)
G880110 NA non-coding downstream 971 33364667 ~ 33364874 (+)
G880111 NA non-coding downstream 1195 33364891 ~ 33365233 (+)
G880113 NA non-coding downstream 2853 33366549 ~ 33366900 (+)
G880114 NA non-coding downstream 3268 33366964 ~ 33367390 (+)
G880069 NA other upstream 61757 33300765 ~ 33301738 (+)
LOC110534883 med13 other upstream 2040895 31241426 ~ 31382578 (+)
G877809 NA other upstream 2158077 31205083 ~ 31205418 (+)
LOC110533688 NA other downstream 680798 34044472 ~ 34047724 (+)
hsd20b2 LOC106603577 other downstream 1070846 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 1073644 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 1095098 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 1123124 34486712 ~ 34488757 (+)

Expression


Co-expression Network