G880111


Basic Information

Item Value
gene id G880111
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33364891 ~ 33365233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1001525
ggcaataccaaaataaatggtctattgattctgtatcctcacaacaaaatctgtagAGCTGCCATGAttgtatgccccaaatattcaacatttgtttggtggcaagaattctatataataattttagctgaaaagtcTTAAATCTTGCGTTGTTTTTTACATCAACTCAtactgtaccatggaatcggtacatcaaacaTTTCTTCCCAACTACGGCAcagctgtcaacatcctggtcctcaaatgaaactggcatactttcctatttatgctatttttattcctctgccagttttgatcctttatattgatTGTGCAGATAGatcagttccctacctcctcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1001525 True 343 lncRNA 0.37 1 33364891 33365233

Neighbor

gene id symbol gene type direction distance location
LOC110533672 LOC106603547 coding upstream 224680 33130843 ~ 33140211 (+)
LOC110534913 LOC106603425 coding upstream 301708 33061411 ~ 33063183 (+)
LOC110533671 LOC106603546 coding upstream 323877 32981866 ~ 33045499 (+)
LOC110533664 LOC106603537 coding upstream 584959 32639570 ~ 32779932 (+)
LOC110533663 LOC106603538 coding upstream 729796 32599894 ~ 32635095 (+)
samsn1b LOC106603553 coding downstream 103131 33468364 ~ 33492333 (+)
serpinh1a serph coding downstream 188075 33553308 ~ 33557914 (+)
LOC110533682 NA coding downstream 203204 33568437 ~ 33569230 (+)
acer3 LOC106603557 coding downstream 210176 33575409 ~ 33593092 (+)
LOC100136017 mmp13 coding downstream 251151 33616384 ~ 33621122 (+)
G880110 NA non-coding upstream 17 33364667 ~ 33364874 (+)
G880109 NA non-coding upstream 806 33363868 ~ 33364085 (+)
G880108 NA non-coding upstream 1195 33363495 ~ 33363696 (+)
G880107 NA non-coding upstream 1893 33362776 ~ 33362998 (+)
G880105 NA non-coding upstream 3699 33360853 ~ 33361192 (+)
G880113 NA non-coding downstream 1316 33366549 ~ 33366900 (+)
G880114 NA non-coding downstream 1731 33366964 ~ 33367390 (+)
G880116 NA non-coding downstream 4639 33369872 ~ 33370329 (+)
G880117 NA non-coding downstream 5906 33371139 ~ 33371500 (+)
G880119 NA non-coding downstream 7135 33372368 ~ 33372593 (+)
G880069 NA other upstream 63153 33300765 ~ 33301738 (+)
LOC110534883 med13 other upstream 2042291 31241426 ~ 31382578 (+)
G877809 NA other upstream 2159473 31205083 ~ 31205418 (+)
LOC110533688 NA other downstream 679261 34044472 ~ 34047724 (+)
hsd20b2 LOC106603577 other downstream 1069309 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 1072107 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 1093561 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 1121587 34486712 ~ 34488757 (+)

Expression


Co-expression Network