G880116


Basic Information

Item Value
gene id G880116
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33369872 ~ 33370329 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1001530
gtgatttattagacaAACAGTGATgctttaaaaaatacaattacaaaGACTACAGGGGGGCTTTAACCAAATAttgcaattgcgatttgactATAGTTAGAAtgtaatagtgggcactttgaaaacagtgttgtttgacatgacaactaAATGTAAAAGCCAGGGTGGCgttcatagaattaggaatttaaatactaataggatctctatggaggCATTATTGTGACATGGTGGTTAGTGGTTCCCAGGGGAGTGGGAACCTATAATCTTTGGCTGCATTAAATGTTTTCTTtgacttcatgtagctaacatattcatgctttgccaattcctctctgatttagaagatactgttgcacaaacaacatgctgatttcaACCTCAttgtcattatctccagcacagtaccagtgtctacatatgtgaaaacggcacatttctatgttttgtaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1001530 True 458 lncRNA 0.36 1 33369872 33370329

Neighbor

gene id symbol gene type direction distance location
LOC110533672 LOC106603547 coding upstream 229661 33130843 ~ 33140211 (+)
LOC110534913 LOC106603425 coding upstream 306689 33061411 ~ 33063183 (+)
LOC110533671 LOC106603546 coding upstream 328858 32981866 ~ 33045499 (+)
LOC110533664 LOC106603537 coding upstream 589940 32639570 ~ 32779932 (+)
LOC110533663 LOC106603538 coding upstream 734777 32599894 ~ 32635095 (+)
samsn1b LOC106603553 coding downstream 98035 33468364 ~ 33492333 (+)
serpinh1a serph coding downstream 182979 33553308 ~ 33557914 (+)
LOC110533682 NA coding downstream 198108 33568437 ~ 33569230 (+)
acer3 LOC106603557 coding downstream 205080 33575409 ~ 33593092 (+)
LOC100136017 mmp13 coding downstream 246055 33616384 ~ 33621122 (+)
G880114 NA non-coding upstream 2482 33366964 ~ 33367390 (+)
G880113 NA non-coding upstream 2972 33366549 ~ 33366900 (+)
G880111 NA non-coding upstream 4639 33364891 ~ 33365233 (+)
G880110 NA non-coding upstream 4998 33364667 ~ 33364874 (+)
G880109 NA non-coding upstream 5787 33363868 ~ 33364085 (+)
G880117 NA non-coding downstream 810 33371139 ~ 33371500 (+)
G880119 NA non-coding downstream 2039 33372368 ~ 33372593 (+)
G880120 NA non-coding downstream 3253 33373582 ~ 33373808 (+)
G880121 NA non-coding downstream 4797 33375126 ~ 33375357 (+)
G880123 NA non-coding downstream 7845 33378174 ~ 33378566 (+)
G880069 NA other upstream 68134 33300765 ~ 33301738 (+)
LOC110534883 med13 other upstream 2047272 31241426 ~ 31382578 (+)
G877809 NA other upstream 2164454 31205083 ~ 31205418 (+)
LOC110533688 NA other downstream 674165 34044472 ~ 34047724 (+)
hsd20b2 LOC106603577 other downstream 1064213 34422538 ~ 34435620 (+)
LOC110533705 LOC106603578 other downstream 1067011 34437126 ~ 34443357 (+)
rnasekb rnasek other downstream 1088465 34458769 ~ 34472268 (+)
LOC110534915 rps17 other downstream 1116491 34486712 ~ 34488757 (+)

Expression


Co-expression Network